AMCG00006415


Basic Information

Item Value
gene id AMCG00006415
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4168050 ~ 4177052 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006415
CGCAGcaggaaggtggtcagggaccgGCAGTGAGAAGCTCCTTCCGCAAATTAGGGATGAGGGCGGAGAGGCAGCCGGGGGACAGCGACTCTAATGACGGTCTGGAGGGAGTGGAAGAGGAGAGGCGAGGCTGTATAGCTGGGTGCACTGGTTGGCAGTACTACAACTAATAATGTCCAGATGTTAAACAAGTCATCGCAGGGCTGCTGTGGTCAGAGCACACCCAGGCTGCGCTCCTCCTCTCGGCGCATCTCCGCTGCGGACTCCGTGCGACGCCGacAAGAAGATACTGTATCCAGCCATGGGTAATTCTCCAAGTATACCAGAAAGAAGCACGTCCATTCAGTTTTTACTGCAGGAGGAGCAGGACAACTACCTCCGAGCCGAGCCGCAGTGCTCGATCTGCCTGGGGGTCTTCACGGACCCGGTGACCATCGAGTGCGGCCACCACTTCTGTCGTGCTTGTATCGTCACCTTCTGGGTGGATCGCGAGTTGACCTGCCCTCAGTGCCGATGGCTGTGCGACAGGGAGAAAACAGTCAGTAAACAAGATatccCTTTCGATTGCGACACTCCGGGTCAGCCGCTACAGCTGGTCGGATTTAACGACATCTCCGGTTCTATGCAGCTTCATGAGGATGTCTTGCAAACTTGTTTCCTGAGGCCCGATGTGAAGGACACCCCCGTCTGTGTGGTGTCGGTTATTGGCGAGCGACGAAAGGGCAAATCGTTTCTGCTCAACTACATTTTACGCAAGCTGTCCAAAATGGAACACGTCAACGGCTCTTGGATGGGCGAGGACGAGCCACTGGAGGGATTTGAATGGCGTCCGGGCGCTGACAGCACCACCAAGGGCATCTACATCTGGAGCAGGCCCCTGTTTGTGGAAAGACTGGAGGGAAATATCGCGGTTTTCCTGGTGGACACGGAAGGCTCGGTGGACATCCTGCGGGATTCAGAAGTCAGTGTGAAGTTATCGGCGCTGAGCGTTTTTCTCAGCTCTCATCTGATATTTAATGTTCATACTAACATTAAGAAAACAGACCTGGACTACCTTGAgATGCTCTATCTTATGGCTGAAAATGGGAAAAATGCCTTTGATTTCAAACAATTCCAGGGGTTTGATTTTCTTGTGCGAGACTGGACTTACACAATGGACCTGGGACATGCTGAAGGTGCAAGACAGCTGGAGATAATAATCCAGcaACTGGAAACATCCAAAACGAACCCTAAAGCTCTGAGTATCCTGAAAGAGGAGAATCCCCAATGTTACTTAATGCCATTCCCTGGGAGGAGGATGCTCAAGAGTGAACAGGGGACTGTGCAAGaTATGGATGAAGAATTTCGGGACTGCCTGAGGGAGTATGTGGACCACATTGCTGAAAGCCTAGAGACATCCCAATCCTCAGTAACCGGGGGGACATTAGCAGAGAAATTCAAGATTGTGGCCGACAGCATCCTTAATAGCAAGTACAGGATTTCCAATCAGCTGGAGttattaGATGCCATAATCACCACACAGGCAGAACAGGAGTTTAAAACGTTCTTAGAAGAGCAAAACAAGGTCATGCTGGACCCCCCTAAGAAAATGAAAGCCCGGGTGGAAGTGAAGACGGCGGAGCTGTGCGAGCGCCTGCGGGAAGAGGTCAACAAGCAGGCACTGGAGGACTTCGAGACCTGGGTCCTCGGCCAGCAGGAGGAGTTCCTGAAGATCTACGACATCAAGTTCGGCATAGTGGTGGCCTGCATGGTGACGGTGCCGGTGCTGTCGCTGGCCGGGGGCGTGGCCGGGGGGGTGATTGCGGGGGGGGCGGTGGCGGCGGAGGCGGGGGTGATCGCGGCCGGGACGGCGATCGGCACCACAgccggggtgggggtggggtcgGTGGCCACGGCAGTGGCTACTGCCATGTATAAGAGAATCAAGAGTTTCAAGGAGAGAGACCACAGTGGGGAATAG
>TU137280
gGTGGCCACGGCAGTGGCTACTGCCATGTATAAGAGAATCAAGAGTTTCAAGGAGAGAGACCACAGTGGGGAATAGGCGTGGGGGCGACCTCTCGCACACCCCTCCCAGAGCAAATACATCTATCTGGGACATCTGAGCCCCGACCGTGTTTAGAGAGGGAAAAAGACATGACATTGGAATAGATGAACAAGAAGAGATTGGTGGTGCGTTTTGTTACCACCACTAATCAGTCGCTCAGTCTTCATTTGATATAGCGCCCTGCGTGTGACAGTTGTCTAAGAGTACCCTGCAGGACTCGCGTATACATGAAGTGCAAGCCAATGTATACGAGACGCACAGCAGGCAAACCattagagaggagagagagatgcaggggAATCGGGGTGCCACTGTGTCCGACCCTGTAAATTAATTTGACTTGCAAAACCCGGTCAGGAGTGATTCCTATGATGACCATGTCCAAGTGCGGCAGCGATGTAGGAGATTGCCAttgttttcttgaaatgtgATGCATAGCCAACAagcaaattgtgttttgtgtgtgtgtgtgcaatggGCAGGGGCGAAGCGATGAGGTTTTCCACATACCAGCATCCCCAGAATGACCTGTGAATCTGCAGAGCCACAGTCGCGTGAAGAGAATGCAGGTGTGTTAAACTCCTGCTGCCGTCAATCCACTGCCACTCGACCGCACACGTTCTGGACTGCTGTGCTGCCCAGAGGTGTACTGCACACATTGTACTGTATATTCTGtagtttctttacattttttaaatttgcaaaGTACAGCATTTTATTACACAGTGAATTCAAATTTCTATGAAtggaaaaaatgttatattttgttaaatgtatctCTTGGATGAAGatgtcatttaataattgtttacaGTTGcaactttgttttgtattactgGATATGCCTTAATAGCCCAACCTAAgcaaaagcacaataaaaactgcaaaactgttTCTAATGACTGCAAATAACGCTTTGGTAATTagtttacaaaacacatttacagaaaacatttaataaacaatgtaatttgcaaaatgttt

Function

GO: NA

KEGG:

id description
K25173 RNF112; E3 ubiquitin-protein ligase RNF112

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006415 True 1960 mRNA 0.54 14 4169037 4177052
TU137280 False 1063 lncRNA 0.43 1 4168050 4169112

Neighbor

gene id symbol gene type direction distance location
AMCG00006421 NA coding downstream 26416 4134610 ~ 4141634 (-)
AMCG00006422 NA coding downstream 35303 4131968 ~ 4132747 (-)
AMCG00006418 NA coding downstream 37193 4125812 ~ 4130857 (-)
AMCG00006417 vars2,vars,LOC107379499 coding downstream 44413 4109975 ~ 4123637 (-)
AMCG00006416 LOC104947235,LOC104953484 coding downstream 59345 4099447 ~ 4108705 (-)
AMCG00006431 NA coding upstream 12797 4189849 ~ 4193150 (-)
AMCG00006425 NA coding upstream 18268 4195320 ~ 4197795 (-)
AMCG00006426 NA coding upstream 23709 4200761 ~ 4217871 (-)
AMCG00006430 NA coding upstream 45026 4222078 ~ 4230525 (-)
AMCG00006427 NA coding upstream 56612 4233664 ~ 4242559 (-)
G109635 NA non-coding downstream 811 4166951 ~ 4167239 (-)
G109634 NA non-coding downstream 1461 4166328 ~ 4166589 (-)
G109632 NA non-coding downstream 3493 4163982 ~ 4164557 (-)
G109628 NA non-coding downstream 28781 4139034 ~ 4139269 (-)
G109619 NA non-coding downstream 84598 4081807 ~ 4083452 (-)
G109616 NA non-coding upstream 89775 4266827 ~ 4268470 (-)
G109689 NA non-coding upstream 131121 4308173 ~ 4311951 (-)
G109692 NA non-coding upstream 167335 4344387 ~ 4349812 (-)
G109735 NA non-coding upstream 337258 4514310 ~ 4515575 (-)
G109736 NA non-coding upstream 338885 4515937 ~ 4521369 (-)
G109633 NA other downstream 2450 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 9927 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 352533 3730042 ~ 3815517 (-)
AMCG00006390 NA other downstream 439531 3698885 ~ 3728519 (-)
AMCG00006354 NA other downstream 1273516 2888486 ~ 2894534 (-)
AMCG00006429 NA other upstream 93364 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1400418 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 1837052 6014104 ~ 6042924 (-)
G110140 NA other upstream 2608261 6785313 ~ 6785851 (-)
G110195 NA other upstream 2901337 7078389 ~ 7107138 (-)

Expression


Co-expression Network