Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00006419 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030134.1 |
| NCBI id | CM030134.1 |
| chromosome length | 29342575 |
| location | 4089300 ~ 4090132 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00006419 | True | 300 | mRNA | 0.63 | 2 | 4089300 | 4090132 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00006405 | NA | coding | downstream | 23157 | 4058758 ~ 4066143 (-) |
| AMCG00006406 | NA | coding | downstream | 33055 | 4050226 ~ 4056245 (-) |
| AMCG00006407 | NA | coding | downstream | 46073 | 4040494 ~ 4043227 (-) |
| AMCG00006402 | NA | coding | downstream | 211258 | 3873950 ~ 3878042 (-) |
| AMCG00006400 | NA | coding | downstream | 230383 | 3848364 ~ 3858917 (-) |
| AMCG00006416 | LOC104947235,LOC104953484 | coding | upstream | 9315 | 4099447 ~ 4108705 (-) |
| AMCG00006417 | vars2,vars,LOC107379499 | coding | upstream | 19843 | 4109975 ~ 4123637 (-) |
| AMCG00006418 | NA | coding | upstream | 35680 | 4125812 ~ 4130857 (-) |
| AMCG00006422 | NA | coding | upstream | 41836 | 4131968 ~ 4132747 (-) |
| AMCG00006421 | NA | coding | upstream | 44478 | 4134610 ~ 4141634 (-) |
| G109619 | NA | non-coding | downstream | 5848 | 4081807 ~ 4083452 (-) |
| G109609 | NA | non-coding | downstream | 53969 | 3976709 ~ 4035331 (-) |
| G109540 | NA | non-coding | downstream | 112683 | 3976203 ~ 3976617 (-) |
| G109514 | NA | non-coding | downstream | 222259 | 3866720 ~ 3867041 (-) |
| G109483 | NA | non-coding | downstream | 254877 | 3826510 ~ 3834423 (-) |
| G109628 | NA | non-coding | upstream | 48902 | 4139034 ~ 4139269 (-) |
| G109632 | NA | non-coding | upstream | 73850 | 4163982 ~ 4164557 (-) |
| G109634 | NA | non-coding | upstream | 76196 | 4166328 ~ 4166589 (-) |
| G109635 | NA | non-coding | upstream | 76819 | 4166951 ~ 4167239 (-) |
| G109616 | NA | non-coding | upstream | 176695 | 4266827 ~ 4268470 (-) |
| AMCG00006398 | NA | other | downstream | 273783 | 3730042 ~ 3815517 (-) |
| AMCG00006390 | NA | other | downstream | 360781 | 3698885 ~ 3728519 (-) |
| AMCG00006354 | NA | other | downstream | 1194766 | 2888486 ~ 2894534 (-) |
| AMCG00006344 | NA | other | downstream | 1502454 | 2581337 ~ 2586846 (-) |
| AMCG00006328 | NA | other | downstream | 1759309 | 2324131 ~ 2329991 (-) |
| AMCG00006414 | NA | other | upstream | 62684 | 4152816 ~ 4158123 (-) |
| G109633 | NA | other | upstream | 74802 | 4164934 ~ 4165600 (-) |
| AMCG00006415 | NA | other | upstream | 77918 | 4168050 ~ 4177052 (-) |
| AMCG00006429 | NA | other | upstream | 180284 | 4270416 ~ 4277155 (-) |
| AMCG00006476 | NA | other | upstream | 1487338 | 5577470 ~ 5603733 (-) |
