AMCG00006423


Basic Information

Item Value
gene id AMCG00006423
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4179050 ~ 4185310 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006423
CCCAGAGTAGCCCTGAGCAAATCCGCCTGACAGCAGTGCCGGAATGCGGCGCAACTCGCCGAGGCGCTCAGCTATAAGCGGCCGCCGGCTGTGCGGGTGGCGCAGTGCGGGGTGGCGCAGTGCGGGCTGGCAGTACAGATGGCAGCCGTCCTCCTGCTTTGCGTGGCGCCCCTGATCGCGGGGGTCTGGGGCCGGGTGGTGCAGGACGCCGATTTCCTCCCCTGTAACCGTTTCTTTTATATGCAGACCCCTCCCGCAGGATTTGACGGGGGGCAACTGGTGCACATCTGCCAGACATACGAGGGGACGGACTACTTCGCAACCCTGTACAACGCGAGCTGCAGGCTGCCGGTGTATTCCGCCTATGTGGTCACTGTCCGGGGACAGGGAGCGCCGGACTCTGGGGGGCTGGACGATGTATTTATTGAACCCCAGATTGACCTTGGGGAGGCTGGCTCAGACAATATGATGACCGAGGAAGAAGCTAGAAGTGCCATTGCTGAACAGCTGTCTGCAGATACACAGATCAGTGCAGCAGAAGTGGATGCAAATGAACCAGAGGgattagaagaagaagaagtgaTTGCAAACGAAAGAGAAGAAGGAGATCAAGAGGATGGAAATGTATCGCTGGAAGCTGGCGTCAGTGGAATCCTGCAGGGGTTTTTACCCGCAAGCGACGAGGATGAGTCAGAACTGGGAGACCCAGAGAGCCCCCAGCTCCCTGCAGAAACGGACGCAGCCACATACCCCGGGGGTGCCATGCAGCAGGGGCATCTGGGAGGGGGGCAGGCATTGAAACGGGATTTCACTGCCTACAAGACACACTACCTCAGTTCCCCGCGCCTTCAAAACGGAGAGGCCAAACAGGCGACGCGGACCCTGACAAACGCGGTGCCGGTGAGCTTTACGGATGACTGGGATGGGACGGCGTCCAATTTCGTCCTGGACCGCACCTCCCAGGAATGCGCCAGCCAGGGGGGTTCGCTATACGTCATCTCTGGTGCTAGGTCCACCTCGCCCGGGGTCCAGGAAAGGATCTGTCTGGTGGACTTGGTCTGGACTGCTCTGTGCTGCCACATCCCACAGAACGCCTCAGCCTCCTTCGCTCTCGCCCTGGTGAAGGAAGGAGATGGCCAGGCACGGTTCCTCGATCTGCAACAACTCCGGGGTCTGATCGGCGGAGAGGGGGAGCTGTTCAGGGACAACTGTGGAGAAGCGGAGAAGGGGTCCGAGGGAGGGGCAGGGGCTGGGGGAGGCGTGGAGAGGTGGCAGTCTTCTTACAGATCTGCTGTGGAGGAAAGCAGACAGGAAGGGGATGAGGAGGCTGACGAGGATTCTGAGAGCAGGATCGTAGCGGCCCTCTCCTCTGTCCTGTCCACCCTTTATGAGATCCCGAAGCGGGGCACCGGCAGCCTGCTGGAGGTGGCATATGAAGAGCTGGGCATCTTGGCCTCTCTTCCACAGCAGACAGGATCCCTGGTCTCCAGTCTCGGGGGTGATTTGGTCCAAAGTACCAAATCAGTGGCCAGACTGACCCTGAAGGCCGGGGAGGTGTGTGCATCTCAGGCCTACTCCGCCACCTCCCCCTTGCTTGGCAGCCTCTACGCAGCAGTGATGGAGTCCGCCAATGGGCTGGGCACCCTCTCCTCAGAGAGCATCAGCCTGGCCCTGGGCCTAGTGACAGGCACCTCCAGCATTGCAGGAGACTTACTGGGAAGATTCTGGGACTCCTTCAGCTTCTTCTCCACCACGATTGGCGGCGAGCTGGTGAACAACCTGGCAACAGCAGGGTGGGGTACCACGGCAGTGATTGGGGACGTTTCAGAGGCGGTGCTCGATAGGGTGGCAGCGCCGGCTTTGGGAGCAGCGGTGGCATCGGTGCAGGGTACGGTGTCTTCCGGTGGCACCATCCTGTGCGCCTTCTTGGACATCCTGGCATCGGTGCCATTGGACTCCTTCAACGTGGGGGCGGCTATGCTCCAGGGAGTGGTGGACACAGTTTCGGGAACGACTTCTGTTGTGACAGACATGGGCACCCCCGTCTTGACGACCACAGGGAAGGTGTTGGGTAAAATCTGTTGGACAGTGTTTGATGTGTTATTCGATGGTGCGTCCAGTGTGGGTTCAGGGGTCGCCAGTAGAGTTGCGGGTTGCTTTCAGTGGGATGCACAAGAGGGTAGCTCTGTCTTGGAAAGCACGGAGTCCCAAGATTAGGGCTCGAGGTTGGTTGCTCAGCCATGGTCCTGGACAGCCCCCTTCCCAatccagttgtttttttatctcatGATCCCTGACTCAGCCGCTGTCTAAACGAATAGGAAATGCGTGTTACTATGCTGTGATGAATAATGATCAAAAGATGGCTGATTGCTTCCATGATCAGATTGACATGTTTCCAAGTCTTTATTAGCAACCCATTTGGCTTTCCAGCTCACCCCTGAAATAACGCAAATTACTAAACACTGGCAACGCATGTGAGCTACTGAGCAACAGGCAAACCTATTCCTCTCTGCTGCACACAGACATAGTCCAAGTATGAGGGGTAAACCTGGTTTctgcagaaatgcatttatgtGGAAAAGGCCTACAACCCCCTTTCCTAATTCATCACTACCTTAAGATAGCACAGTGCCTTGAGGATTGGGATAAATTGCTAAACAGATCCCCCTGAGCCATTAATGGGCCGAATCAGGTAATTAAGATGTCTGAGTGGACTATAAACCAGAAGAAACTTTACTATCAGCCTCCAGGAACTGAACTGTGCACCCTTGTGTAAAGGCTGCTCGAAGGTTCCCTTAGCAGTCTTTCATAAGATAATTGATAAAAAAAGGAACCACTCTACTTCCTTGCAAGTGTTAAGTTTATTTGTGCTTTGACTGCTATAATCGTACCCCCGGGGCTCAAGGTTTAATTATCAGGAGTGACACAGTGTCGGAGGTCTGTCAGTAGTTGGGGTGTTATTCTCAGCAGGCACTGCCTCCTCATTTTAACCCTGACTGtgtgttcagagagagagagagttgtttCAGAGGGAGGGGGTGTGAGCGGCATCTGGAAAGTGATGCCACATAGTCGACGAGAAGCCACCGAATGGGAGAGAGCTAAAGATGCTTAAAGCTGTTAACCACTGAAAAGTGAGTTCCAGAGGTCGATGTAGCAATTAagcttaaaaacacacaatcttgATACCTACAAGGCTATAGGGTAGTTTGTGTTAATATTGATCTTGCATCGACCTTTGTGGTTTTAATTAtgtgtgatgtatatatgtatattgtgcaACTGgtcatgctttattttatagagGGTGTGGGCTGGCTGCTATGAATTACACTGGGGGACAGCGCTCAACAATGTGAAGTGAAGGGGAGGCATTATGCTGCTGTTGAATTGTGTTTCTTATCTGGGATATGCCCTTTTATAGCACGGGATGATTTGCACCGAAGCTTATGGATCTCTGTTTTACAAAGTATGATTCTAAAGGGGAACTACATTTCTCCTCCTTGTGCTAAAGCCCATGATTTGCAAAGGATACccaaaaaagacaggaaagtTGTCCCGGTTGGAATAACAAGTTGAAAGATAGAAAGAGAAAGGGGGTTAGACTAGAGTAAGAGAAAAAATACTTCAGTGCAAGAGAGAAGGCCTTCAAACAAAGGGCTGGACACAGAGCAAGAAAAGTTCAGCAGTGGACCAAAGCAGACATGGGACTGGGCATGTGTGGAGTCGCAGTCAACAACACTGCAAATGAGGAGAATGAATAGTGTTTTTCATACCTAGCTACACTTATTTTGGTAAAACATTACAacaatgggcaccaattcttaatgaatccCCAAGAAAAAACATAGAACTGCCTGATGCAGTTCCTCTGAGCTCTGCTGTTGCATCACATGTATTAACCCTAACTTGAAACCCTGTCTGTCACCCCATCCCTATCTCTAACCTTGAAacacatgtgattaacagcagaacttaAGAATGCCTATTATTATGATGACATGGGCCTGAGCTCTGGGTTCACAGATAAAGTGCAGACACATCACTAGGTAGCTGGCCAAATGAAACACATGCAGAGTTTTCAGAAGACTTTATTAGGGGATGTTATTATGGGGCTGGTGTGAAGGATGACTAAAACACTTTTTAGTGAGAATGTGTGGGTATATCtcagtttttgtgtgtaaaGCTGTAAagcataaatcatttaaaatgctgaaaattaATGGAATgattgaatatttaataaactttgAAGGTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006423 True 4265 mRNA 0.51 3 4179050 4185310

Neighbor

gene id symbol gene type direction distance location
AMCG00006412 NA coding upstream 27359 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 44484 4133868 ~ 4134566 (+)
AMCG00006411 LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136 coding upstream 79332 4091688 ~ 4099718 (+)
AMCG00006403 NA coding upstream 96884 4079626 ~ 4082166 (+)
AMCG00006408 NA coding upstream 254530 3922421 ~ 3924520 (+)
AMCG00006424 ino80e coding downstream 2283 4187593 ~ 4190086 (+)
AMCG00006432 NA coding downstream 69024 4254334 ~ 4266243 (+)
AMCG00006433 NA coding downstream 166342 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 256651 4441961 ~ 4450469 (+)
AMCG00006446 NA coding downstream 303187 4488497 ~ 4496374 (+)
G109575 NA non-coding upstream 9944 4168084 ~ 4169106 (+)
G109573 NA non-coding upstream 19859 4157736 ~ 4159191 (+)
G109572 NA non-coding upstream 22081 4156442 ~ 4156969 (+)
G109571 NA non-coding upstream 22844 4155964 ~ 4156206 (+)
G109541 NA non-coding upstream 143742 3976728 ~ 4035308 (+)
G109597 NA non-coding downstream 44924 4230234 ~ 4230484 (+)
G109656 NA non-coding downstream 129321 4314631 ~ 4316465 (+)
G109660 NA non-coding downstream 143559 4328869 ~ 4329278 (+)
G109662 tubb,LOC108432309 non-coding downstream 149013 4334323 ~ 4335450 (+)
G109655 NA non-coding downstream 188838 4374148 ~ 4377377 (+)
AMCG00006413 NA other upstream 11098 4159523 ~ 4167952 (+)
G109570 NA other upstream 23301 4152816 ~ 4155749 (+)
G109538 NA other upstream 215054 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 314318 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 530139 3637743 ~ 3648911 (+)
G109714 NA other downstream 291624 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 339496 4524806 ~ 4527738 (+)
G109781 NA other downstream 839585 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 895571 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 908961 5094271 ~ 5107022 (+)

Expression


Co-expression Network