AMCG00006424 (ino80e)


Basic Information

Item Value
gene id AMCG00006424
gene name ino80e
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4187593 ~ 4190086 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006424
ATGAATGGACAGTCCGAAATCGAGGTGGACTACAAGAAGAAATACAAGAACCTGAAGAGGAAATTAAAGTTCTTAGTTTATGAACAGGAGTGTTTTCAGGAGGAGCTACGCAGGGCCCAGAGGAAGTTGCTAAAAGTGTCTCGTGATAAAAGTTTCCTTCTGGACAGACTGCTGCAGTACGAGCACGTGGATGATGATTCTTCAGGTCAGCGGAGGACCAGCCCTCACTTACCCAGAGCCCCCTCTCCTTCCAGCAGCCTGTCCCTGCTGTCCAGGACCACCTTCCCTTCCCTGCAGAGCGCGGCAGGAGCCCCCTACCTCAACACGCTGCCCTTCCCCCCTGAGTATCTAGCGCCCTCTGCTGACACAAACAAGAAGGAGAAAAGATCAAAAAGCAGCAAACACAGGAAGCAGACGCCGGGCAAGGTACGGTACTCCCTGCAGACCCACACGTCTGAGCGGCTGTTCGGCAGCTTCAGTCGTGGCCACACTCGTTTATTTTCAgtgatgtgtgttttgattttcgTTGTGATTGGCTATGATTTATGCTCTCATGTCGTGGTGCCCCCGCCACCGGCTCCCTCCCCGGGCCCCTCCTTCCCCGTGGCTGCCGCCGCCCCGGCCATGCCCCCCCGGCCCTTCAGCTGGGTCCCCCGGCAGATGCTGAGCGGCGATGCCCCCGAGGAGGGCAGCGAGGGAGAGAGTGACAGGGAGGAGGAGCGGGCGGAGGGAGAGGAGGCGGAGCTGGTCATCGACATCCCCAACGAGTGA

Function

symbol description
ino80e Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

NR:

description
PREDICTED: INO80 complex subunit E isoform X2

GO: NA

KEGG:

id description
K11669 INO80E; INO80 complex subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006424 True 771 mRNA 0.58 6 4187593 4190086

Neighbor

gene id symbol gene type direction distance location
AMCG00006423 NA coding upstream 2283 4179050 ~ 4185310 (+)
AMCG00006412 NA coding upstream 35902 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 53027 4133868 ~ 4134566 (+)
AMCG00006411 LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136 coding upstream 87875 4091688 ~ 4099718 (+)
AMCG00006403 NA coding upstream 105427 4079626 ~ 4082166 (+)
AMCG00006432 NA coding downstream 64248 4254334 ~ 4266243 (+)
AMCG00006433 NA coding downstream 161566 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 251875 4441961 ~ 4450469 (+)
AMCG00006446 NA coding downstream 298411 4488497 ~ 4496374 (+)
AMCG00006444 NA coding downstream 306320 4496406 ~ 4516083 (+)
G109575 NA non-coding upstream 18487 4168084 ~ 4169106 (+)
G109573 NA non-coding upstream 28402 4157736 ~ 4159191 (+)
G109572 NA non-coding upstream 30624 4156442 ~ 4156969 (+)
G109571 NA non-coding upstream 31387 4155964 ~ 4156206 (+)
G109541 NA non-coding upstream 152285 3976728 ~ 4035308 (+)
G109597 NA non-coding downstream 40148 4230234 ~ 4230484 (+)
G109656 NA non-coding downstream 124545 4314631 ~ 4316465 (+)
G109660 NA non-coding downstream 138783 4328869 ~ 4329278 (+)
G109662 tubb,LOC108432309 non-coding downstream 144237 4334323 ~ 4335450 (+)
G109655 NA non-coding downstream 184062 4374148 ~ 4377377 (+)
AMCG00006413 NA other upstream 19641 4159523 ~ 4167952 (+)
G109570 NA other upstream 31844 4152816 ~ 4155749 (+)
G109538 NA other upstream 223597 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 322861 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 538682 3637743 ~ 3648911 (+)
G109714 NA other downstream 286848 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 334720 4524806 ~ 4527738 (+)
G109781 NA other downstream 834809 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 890795 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 904185 5094271 ~ 5107022 (+)

Expression


Co-expression Network