AMCG00006427


Basic Information

Item Value
gene id AMCG00006427
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4233664 ~ 4242559 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006427
ATGCTGCTGTGGATTCTGCTGGCTGCTCTGCTCCGCACAGTGCTGTTTCTCTTTCCCCCGGTTCTCCTGGCAGATCTAGCGTGGGGGGATTTCCGCATAAGGAACACCCGTGTGTGGTTGACCCCCGGGGAGAACCTGACCATCTCCCTCACGTCCCACGATCTGAGGAGAATGGTGTTCAAACCCTGGGCGTCCACTGGGTCCCCCAAGGTGGTGATGGAGGACCTGAAGCTGGTGGACCCCCGCTGGAAGATGAACTCCAGGAAGGACCAGCTGACTTTGCCGAATGTCACGTTACAGGACCAGGGCCTCTATGAGATGATGTTCCAGTACGTGAATGTCGCGATGACTACAATCCACCTGACAGTGATGGAATGCGTAACCAACATCTCTGTTTACTACGGAGAAGACTTTGAGTTTGCCCTCACCACCACTCCGTCCTCGGTGAGGGTGGAGTTCGAACCCTTGGCCCCTGGGCCCCAAGTGCCCAGGCTCCTGCTGAATTACAGTCACTTCCCCAACCCTCAGTACGACCGCAGGGCCACTGTCCATGAGCGCCAGCTGACGCTGCGCAAGATGAGCCCGGAGGACCAGGGCAAGTACACCATCTGGGACAGCATCGGCCATGTCCTGAAGACGGTCTGCCTGAAGGTGGTGGGTGAGTGGTGTACGATTGTAGTGCCTTTGTATCCCCCCCCACATCCCTCTTCAGCTCTGACTTTCGGTGTTCCTGTCTACCCCACCCACCACCGCGCAGCTCGCAAAGAACAGAAGGAAGTGTCTTACGGCGCCACAGTGGAGATCCCCTTCTACGCCAGGGACACGGAGGTGGAGCTGCGCTTCTCCCCGGAGTCAGAGCACCCTGCCCGGCTGCTGGTGGACGGCGGGGTGATCGTGGACGAGCAGTACGCGCAGCGCCTCCGCGTCGGCACCCACGAGTGCACCCTGGCAAACGTCACCCCCCGGGACCGGGGCACCTACGAAGTCCGAGACAAGAAGAAGGTCCTTGTCCTGCGCCTGGACCTGCAAGTCGGCTCCTATGTGGTCCCCCCTTACTTTATCGCACTGAAGGCCTTCGGGTCGATGGCGGTGGtcgtgctgtgtgtgtgcgctgtgcCTTACTTCAGGAAGACCTGCCGGGAGCTGGACAGCAGCGGTGCCCCACAGCCTCGAGTGGTCGAGGTCCAGCCCGGCAGGACGGCATATGCGAATGCATATTCCAACGTTCCTCAAGACAtccaccctcctcctccgtaCGAAGCCAAGCCCAAGGAATGGACAGCCCGCAAGCAGGAGAGGAAGGCCTACATTCCTGTCCACGAGGGCACCGCGGCCTCTGctacagaaacacattttggCTACGGAGCTACTGAAGTGGCGTTGCCCAGCGAGGAAGGAAACAGGTTCGAGCTCATACAGGGCTACACTCATATTGACGAGGGCGTCCCTGCTGCTCCGGCTCCAGAGCCACACAGTCACTACAGAGCCACTGAGCTGAGGCCGCCCAGCGAGGAAGGGGGAGGGCCGATGCAGTCCCAACCCCAGGCCTCAGCGGTGTCCGTGGGAGACACCGTGTTCCCCCTTCCTGTCCAGATGGACTGCCTGGCTGCCGGAGACCCCCGCGCCCCTGAGTTCCAGATCTCCGGTCTGCGCCTGGACAGCGGCCCGGACCCCTGTACCATCTACACCTCCGACAAACTCAACCTGGGCCCCTCCCACTCCTAACGAGGGCCCCCGAGACCCACTGGTTCAACGCCAGGAAAGAAGGGACGTGCTCTCTCCGTTGACCAGGAGGTCCCCGGTCCagccctgtgtgtctctgcctgaTGGAGATACGGTGTCAAGAAACCTCCTGGTCCTCTGTGGTTCAGGTCGGACATGGGCCTACACTGAGGGCCTCGAGTGCAACATCATCAATTAGAGCTGTCTGTGCCACAGCTGCTGTTGATGCCACCGTTTTCCCCTCTGTCTCTGCGATTCTTACGGATCGTTCATACTTAAGGGCTAACACGCTggacaaaaactttttttttggtagggTTAATCGGGCACTTGCGCTATGATTGTCAAAACGGGCAAAATGTAGAATGTGTTGTAGAGTAATTTTCAAAAACCTCATTCAGGTCACTTGATAAACTGCCTTCCGAGGGATTAACTGAGAATGTATTCCACGTCGACTTCCCGCACCTTCACAAATACATGTTTGGAGTCATTCAGGTGTATAAATTGGGCAATTTAAATATCACTTTGCAACTTTTTCGGGATTTCTTTTTCCATTAATGGCAGAAATGACTGAAGCAAAACCCTCTCCTTTTAAAACACGATTGTTTGGTCAGAGCCGGATCTGCGTTTTTTGAACAGTAAAACGTGCGCATCTGAAACATACACATTGCTTGGAAATGAaccagtatgtgtgtatatatgtgtttatattatctaaatatataaaaatacatacacacatatatatgaagCCTACTAGGTTTGTGGGGAACTTAAAAGAATATCCCCTTTCCTTACTTGCCTTAATTAATAGTTTAACCTTGTCAAAGTAATCTTTAACCCCCTGTTAATCCCCCTGTTCCTATCCTGTGGGAATAAAAGACGAGTGAACGTCGTTTCAGATTAATGAAGGAGCagctttatttaaatggaaagttAAATTCGGAACAggactgcatttaaaatgctttcctCATCAGGGTCTCCTGTGCCCATTGCGATTCTGTCACTGCTAGTAAACCATTCTCCTTTAGTTTTCCTATGGACATTTACTATAATTCAAAAGCCTTAGACAAACATATCTCACCAAAGGTAATGGGGCAGTTCTCCGGGGCAGTTCTCCGTGGCAGTGGATTGTATAGCAGTTCTGTGCAGTGTAGATATTTTTTCTGGAGTGGCATCGTGACCAGCAAGTACATACTGTGAAATTTAGGACATTTTTGCCCTCAGCTGTGCTCCAATGGCCTGTGAGCCGTAATGGACACTCATGACTGCTCTTCATCTGCAGGAATGTGTTGGTttactgttactgttttattttgatagaAGTTATCTTTTTGGGGGAGACCACATAGGTCTCTTGACTCGGTAGGGTTGGGACTGATGTCTGATTTATGCCTTTCAGTctgttatatttttctttttcttttttttgattATACCTCAACTATTGGGCAGCTGTTTTTCCGCTCACCCCATTGCTTCAGTCTTTGACCAGCATGGGACAGATGACGCTGATGTTCATGCATATTCTGAAACGCACACCGAGCCACAGTGCAAATGGCAGGTCTACAGTATGTTGGGGAGGACTGGTGCAGCTCTCAGCGAGGACACTGGAGCTCCCACGTGCCCCCCGGCCCACACAACCCTCATCACACTTGGCTGATTACAGTACTGGCTCCGAGGGAAATGCTGGTCATATTCGAATGTGATACCATCCATACTacagggcccagactggagccagcgctgtgtggactatagagCCCAGACTGGCGCTGGCATTGTTTGGACTATAGGGGCACAACCTGCATAAATAGTTTTGTCTTGCGAAAGGTGCATGCATTGTAAAGAGTCGAATTCTGTCAGACTTTGAATGCGGTTGTCATGGAATCGCATACAAGTTGCCTTTTTCAGGTTGGGGGCCGGGCCCTGCGGAGATCAGGGGCCTCTTGGACCCACTTCGTTCTGAAACCAGTGAAATAGATTTAAGGAATTATGAATTAATCAGCACACCAACCAGCTGATTACAAAATATCCTCTCGTAATGAAGGACAGGGAAGGGATTATCTCCAACTGACATGTCTTCGGGTGCAGTTTATTTACAGACAAGCCTAATAGTTATAAGAGTTTTACACCAGTATAACTTCCAGATAATCCTCCAGATAATTTATGGTTACGTTGATAAAATATGACGAATAAAGCCTTTATCTGGCTACTCAAAAAATTCTCCATAatcattgataaatacaatttttaagtaaataatggTACTCTAGACTGGTATTTGTGTGTGCTGATTCCTACCCAAAACAAGCAGAAAActtgttaattgtatttacttttatataatattattttttaacttacaaaaaagaaaatccacattaataataataaaaactgtcatCCCTTCAGACAACCAAGCAAAGCTTTCTAACCTCCCCTGTATGAACTTCTATATGAGGGAagcttctgtgttttgtgttttggggatattgtgtttgtatgaaTCAAGATGTAATGTAATGGCTGTCCTTCATTATTGAGTGAGAGTTTTGTAACTGGTCAGCTGATGATGACTGTActggtttaatttgaaaaagaaaaaaggatgacTGACACAAGTGTGCAACCCTCCAAGGTGTTCATTGGGAATTTCTGACCTGTCCCCAATTTATCTGCATTATACATAAAAAGTGCAAAGCTAGCATTTATGCATGGAGCCCAGCAATAGTGGATGTGTGGAAAATAACACTACTGCAATGCAAAATCACCCTTTAAACTTTATCCAATGTTATGCCTATTTCCAGTCTCAGTAAACGGTATATGTACTTCTGCGTAGATTAATGTTACTGTGTGTATTCCTGTGTGGGATAGGGAGCAGGGGTTGTACACATGTTAGTGTTATTAGCCAGTGGTGTGGCACAATGGATAAGATGGCATGCATTAATTAACCTCTCGTTcctgaaaataaacactaaagaAACGCTACAGATACCCCTAAAGACTTGTCAGAGAAGGAAAACCCATCGCAACCCTGCCTTTTTACTCTACGCACACGCAGATTTCAGGTCAAATGACTGATCTTGCACAGTCTGATGAATGTAAAGTTCAGACCTTCTCTgtaaatttgtgtttattaagaCGGTACTTTATTTGGCGCATGTGTGAGCTTCAATGCTGATTGTAAAGTTTAAATCCACTGCGTTTGTTCCTCAAATCCACTACCTTTTCACGCGTTTGAATTCAACAGGAACAGAAAACCCAACAGACTCTAATATAGCCAGCATAGATAGATTCAATTGAACCCTTTTTCTGTATGGCTCCATCCAGTGATATGTCATTTTTATAAAAGCTTTAAATGGTTGACGTGTGTCAGTCCCCCGAGTGCGTGTCTTGTCCATGGTCACGGCACgccattgctttttttttttgtccccagGAGACACATGTGAAATGGGGACTGGTAGTTAATGTTGCCTCTTGAACTTTGTATGCCTTTGCATGTGCATTACTTGCcagttctgtttattttccttgtagTTTAACAGATATTTATCACTTCGGCTTCTGAAATGGGTCACGCCTGTTTCAAGTAAAAATGTGCACCGTGTTCACTTCTGTACAGAGACACTCCTTGTTAAAGGGCACCTGTCCTTCTTCATGGATTCTGCTCATGCCGATCTGTTTTACAGGTGTGCTCAATCAGTGGCTAAAAATCCTGTTCATCTGGACTGATTTGGTGAAAGAATGGGTTTGGTTACAGTGCATtatcctttaaaatgtaatcccaTCTGAGCATGGTGCATAAACCACGCACAGCATATATGGAATGTATTCAAACAGTAGAGGTAACAAATGTAGGGACGCATATAATTATAACTcagattttaaatagttttagtttagtttttctccTCCTCACAATGGCTATGGCCCcaataataacagaaacacTTCCATATCATAGTTATCTGCATAGCATTGACTATCCTTCACAGCCCTGTCAGTCACTTCTGAATGTCGCTGATGGTTGCCGGGGAACAGGGAATAATTTGTATGGGTGTTGTGACTGCtgttctcattttttatttttatttaattatattacatttgttgGCATTTGTAATTGTAGGGGTCATCCCACACAGCTGTGCATTATGAAACTTGACATTTGTTACATTAGTAATATCATTATTaccagtattatttttttgattttgtttttgttgttgtgtttcctGTGACATCACACAAGGCCAGTATCCGATGTACAAAAGAAGAACACCAGTATTCCGGAGCTTTTGGGCACGGAACGGATTTGTACTATCAAACGGACACAGTGTAGGAGGCTGTCCTGGCCGAGACAGTACAGGGCTGCAGTCTTTTGTAATGGAGAGATTTGTTTGGGGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006427 True 6140 mRNA 0.47 9 4233664 4242559

Neighbor

gene id symbol gene type direction distance location
AMCG00006430 NA coding downstream 3139 4222078 ~ 4230525 (-)
AMCG00006426 NA coding downstream 15793 4200761 ~ 4217871 (-)
AMCG00006425 NA coding downstream 35869 4195320 ~ 4197795 (-)
AMCG00006431 NA coding downstream 40514 4189849 ~ 4193150 (-)
AMCG00006421 NA coding downstream 92030 4134610 ~ 4141634 (-)
AMCG00006428 NA coding upstream 2626 4245185 ~ 4251723 (-)
AMCG00006435 NA coding upstream 72163 4314722 ~ 4330918 (-)
AMCG00006437 zgc:153426,LOC107393497,LOC106534675,LOC100712088,LOC102780606,LOC103367161,LOC107711200 coding upstream 93113 4335672 ~ 4336182 (-)
AMCG00006434 NA coding upstream 124691 4367250 ~ 4368596 (-)
AMCG00006436 NA coding upstream 134122 4376681 ~ 4387311 (-)
G109635 NA non-coding downstream 66425 4166951 ~ 4167239 (-)
G109634 NA non-coding downstream 67075 4166328 ~ 4166589 (-)
G109632 NA non-coding downstream 69107 4163982 ~ 4164557 (-)
G109628 NA non-coding downstream 94395 4139034 ~ 4139269 (-)
G109619 NA non-coding downstream 150212 4081807 ~ 4083452 (-)
G109616 NA non-coding upstream 24268 4266827 ~ 4268470 (-)
G109689 NA non-coding upstream 65614 4308173 ~ 4311951 (-)
G109692 NA non-coding upstream 101828 4344387 ~ 4349812 (-)
G109735 NA non-coding upstream 271751 4514310 ~ 4515575 (-)
G109736 NA non-coding upstream 273378 4515937 ~ 4521369 (-)
AMCG00006415 NA other downstream 56612 4168050 ~ 4177052 (-)
G109633 NA other downstream 68064 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 75541 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 418147 3730042 ~ 3815517 (-)
AMCG00006390 NA other downstream 505145 3698885 ~ 3728519 (-)
AMCG00006429 NA other upstream 27857 4270416 ~ 4277155 (-)
AMCG00006476 NA other upstream 1334911 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 1771545 6014104 ~ 6042924 (-)
G110140 NA other upstream 2542754 6785313 ~ 6785851 (-)
G110195 NA other upstream 2835830 7078389 ~ 7107138 (-)

Expression


Co-expression Network