AMCG00006432


Basic Information

Item Value
gene id AMCG00006432
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4254334 ~ 4266243 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006432
GGCTGAGGAAGAGGCTGCCACCACGTCAGATGGAAACTGAAAGTAAAACCCTTCTGCCCTGTCATTCCTCACCGCAGAGCAACAGCAGCAGAAGGACTTTCTTCACTTTCTCAGGAACCATGGAAGATGACCCTAAGGGTACAAAACCATATGGAGATAATAAGTCAGACGAAGAGCAAGATAATGCAGATCATCACAAGGTAAAAAAGCTAAGAAAAGAGAATTCTGAAGACCCAACTGGCAGTGATCTCGCTCTTAAACTTGAGGATGCTGGTCTGGATCAGGTTTTTTGGactgatatttttaaaaatgttctaaatgtCACAAGTTCAAAACAGCTGCAGTATTTAGGTGGTATGGAGTATAAAGAACTAGAGAAGCATGTCCGACACGAATGGGAAAAAAGAGCCCTGCAGAAGTTGCTTGGAGTTCCAGATCGGAAACGAAAACTAGTAGAAGAAGAGCAGTGTATCAGAAAAGCAGAGGAACAACAACAGGAAGCATcaaaaaaaagacaggacaAAGAACTGAAGTCTTTGAAGGAGAAAGAAGAGCAGTTGAGAAATGATCTTGCAGAGCTTCGGAAACTGCAAAAGGAGGGCAAAGAGCGAAGGGATGCTGAAGTGAAAGAAATGGAAGACAAGATTCGCTCAGCACTCGAAGTCCCCAAGGAAAGTTGGGTGCCAACTAGTCGACCACTACAGGATCTGATAGACAACATTAACAGACAGCTCAATGTTTTAGAGAGCTTTTCAGTTTCTCTGCCTGAGGTCATATCTGATGAAGACGTTTTAAAGAATGCATCTGGAGGTCTGGCTCTGGAAGGAGTTTTCAAAACCGGGAGACTGAATGACATGGTGGGCACAAGAGAGCAGCTCATTGAAGTCCCTGAGTCTTTCTCACTTCGTGGCCCTCAGCAGAGTTGCTTTTATGAACAGAAAGAATTTTCATCTCATGAATCTCAAACAGTGTTTCAGAAGGTCTTGGAAAAGCTTGGCTTCAGTTTCAGCTCTTCATTAAAAGCTGGTTTCTGGGGCTTGACTCTCGAGAACACGactgaacaaacaaaatctgcagaaacacagaaatCTGGCAAGACTTCATCTGAACAGTCTTGTATTTTCAACACAAAGTATAACTACATACCCCTGGCTTCTTGCTTCATTCATAAAGATAAACTAAAGTTGTCACCTGCTGCCTTGGTGGATCTTAAACACGTAGAAATAATCTTGTTAAACAACAATGAAAGAATTTCTCTGGGAAACAGAATTGCAAAGTTTTTTGAGAGGTTTGGCTCCCATGCCAACCAGGGTCCTCTGCACTTTGGAGGGGTGTTCTTGTGGAAAGCTTCTGCTGAGGGCTTCCGGAGCACCAAGCTCACAGAGATGAAGAGCCTGATGTCTGAAGCTCTTAATGTCTACATTGGTGCTGGATACAGTGGACCTACTGTATCATGTTCAGGTGGGGTAAATGTCTCCACAGCACAGATGAAAGGATCCTTTACTGGGAAGTACAGTGAAACACTGATGAGTAAAGTGCAGTTGTCTGTCAGCAGAACTGGCGGTCCAGCTGATACAGATAACCATCTGCAATGGAAATCCACTCTTGTCACCAGCAACAAAACCTGGCATGTGATAGACAGAGGAACCACCCTAATTCCTGTTTGGGACATCATACTGCATGCTCACAGAGGAGACTTCAAAGATGTTTTAAAGTTAAGCAGCAGTCTCATGGAAGCTTACAGAATGATCACAAACCAGAATGTAGAAGAATTGTGGGGAGAGAATGTTCTCACAGCAGTAAGAGAGGCTGAGATGATGATTCAGTCAGTGAAGGAATGGACTGTGTCTGAGAGTGAGGAGCACTTGAATGAATTACTACAGTTTAAGATTAAGATGAAAGACAAAACGGGCTCAAATAACACATGGATTCAAATGTGTCTTTCCAATCAGGTCATTCAAGACTTCCTACTGAAAATTGTTAAAGAACATGAATATGAAGAAACAATATATCTAAGAATGTTGATGCGTTCTCTTCTGGATCCTCATTTATATTCTGTGAAAAAATTCCCAAGCAGAGCTGAAATTCTGAAGTGGGCTTACCAGAATGAGAGTGAGATGCAATTACACAAagctatttctgtttctgaaatTTCTGAACTGAACAAAATCCTAAAGAATTCCAAAGAACAACTGCAAGATTCTGTGTATGCTCTTAACACTTCTGAAACAGTGCACCATGCTAAGATAAAAGCTACATGTTCTGTAACACTCTCCTTGAACTCCCTGAGATGGACTTTAAGAGATAACAATGAGGAAGAGGCAGACCTGCTATTATGTTCCATCCTTGGTGTTGTAGGATACAGCAAACAAGACAACACATTTGATCATCTGCTGGGTTGGGATGAGATAGAGTTTTTAGAGAATGAACTACAAAAGCATTATGACAAATATTActgtttgagaaaaaaagatgCCTCACAAGCTCAGGCCTACTTGGTGTTGACAGCTGTTACCGTATGCAAAGATGGCAAGAGTGTCTCTTCAAGGGACAAAGGAAGACGGCTCCAGTATCTCAAAGCTGAAATGAAGGAGACACTTTCTGCTGTTTCCACAGCAATAGAAATTGAAGCTCAGTATCAGGACTGGGAAAGGTTTGAGCAAGAACTGAATTCCATTATCATGACCTCCCAGCTCAGTGAGCAAAATGTCAAGCAAGACCAAATGTTTAATGACCTTGAAAGAATGCTACACTGTGAGGATATAGCATTCTCAGAAGATGGACAAAAAGATCAACAGCCTTCCCAATATACGCAGGATGACAGTCTTTCAAACATGACAAGAACAGACCCGGATGGTAAATGTGAAGTCACCCTGcctgtgaaaagtgaaaaatgtgatGCTTTTATGAATTTGCTTCAGAAACTGGGGTTGAGAAATTCTTATCccaaaaagttgagaaaaacaGATGTTCTTGTTATAGATATTCTGTCACAAAATGCCAAGTCACCAACAAAAGAAGAACAGCTGAGATTTCACTATCTTTACAAGCTTATGATGCTGGACTACAGTGCCAGGAATCTGTTTATTAAAGCTCAAATAACTAAATCTGATGGACAATGTATGGAAGATCAGATTTTACCTGATGATGAAGACAGTGCTGATGATGACTTCTTCAACACTGATGAAGactgcaatgaaaatgtcagATTCCAGGAGTCCCACATTCACCCCATGGATATACACATGGCTGTTTTCCATTGTGCTAATGATTTTCTGAAGCAGTACCTTTTTTCAAAGCTCTCTACGTGTCAGTTTGGCTTACCCCTCCTGGTACCTAACCCTTGTACTGGAGAAGTTGAGTTCCCTCTGTGGGCACTGAGACAGATCAAGAAATCATGGCAGCATAATCAGCAATCTGAGACGGGCAGCACTGTGAAGTACAACAGCAAAGAGATGTTCAATACACCAGTGCCAATTGTGTCCTTCATAAGACTGGGATCCTCAGTAACCTCAAAATCCCAGATCCTGAACAATGTCATCAGCAAGAAGAAGCACAGTGTCTTCTTCCACCGTCACTGCAGAGGCAGCACCGAGCACTGCCTGCTCATGGATGGGGTTGTGGAGATTGCTTGGTACTGTCCTGGGGGCAAGGATGATGTTTTTGATGATTGTGTGGCTTTTATGAACCTTCATGGGGATGCCAGCAAACACCCGAAACAGCTTACATTTCTGCAGCAAGTCAGTACTGTTAATGTAGCTCTGCTTTCAGAAAACCCACTGGATGAAGAAGCAAGGAAGACATCTGAGACTCTGTCCAAGTCTCCTGTCCCCTTCATTTGCCTGTTtgctggaaaagaaaaagttgcACGAGGGAAAAATCCAACAAAGGTGAGATTGGGGGCCAAGAACAGAAATGAAGCTGAGCTGACAGATGAAATAATATCGGCTATTAAACATTGTGTTTCCACTAATGAAAAGACTTCCAGTCTGAAGACATACTTAGAAGCAGCGAGAGACCAACAATTTAGAGTAGATGAAGACAATGAAGCATGCAGACAAGGCAAGGGAATGGCTCAAACTTTACTGTGCCTGTTGAAAGAGGAGAAAGTATCTAGGCTCAAAGAAAAGTTTTTGCCTTTACAAGGTGAACTGTGGCACAGCTGGTGCAGGAAGGATAAAGAGCAGTATCGTctggaaagcaaagcaaagaggAGCATCGAACAGCAGTTGAGTGACATCAGAGCTCAGAAACTATCAATACGCCATCAACAAATACAGAAAGCATCTCCCATCAATGATTTAATCCGATCTTTCCTGGAGTGTTTAGCTTCCCCAGAACATTCACAAGATGCTAAACTTTACATGCTGCAGTGGCTGAGAATATACTTAGATGAGCTCCTTACAGACACTCTCACAGATCTCCAGGAAAAATACCACTCAGTTTGGACAGAacttagaaaaaaacaaaagaataaggATGATTTCAATCATCTGCAGGAAGATCTGAACAAAATATCTGAGGATCTTAATTCTACAACATTTGGATTTCAGCATTTTATGAGAGAAATTGGTCAGGTGTATGAGGCAGTTCAAACAGTGCCAGAGAAGCTGAAGGATAGAAGACACCATATTGACAATCTTCCTGCCATTGGAGCTGAAATGCTGATCTCAGGATACCCTCTGGAGCTGATGGATGGAGACACTGCTCATGTGCCCCTTCCAAGCTGCATTTTTGTTCACCAAAATGTAGCAGAATCATCAgcaaatgacaaaaatatgGAAGGAAGAAGGCGTCTCCAGGAGAGATTGGATGAAATGACGCAGATTGCTGCAAAAGAGGAACATTGTGATTCTACTGGTTTTAGTGACGTAATACAATTCGATGTTGAATCTCAGGTGTTCTACTTCAAAAACCTTCTGGAGGGTGATCCTCCGATGGCTCCTCCCAACCCCTCCTACAGCCAGAACGTCCAGGATCTGAAGACCAAGCTGCTCTCCATTGCACAGTGGCAGCGAGACTTCAAGGCTCCCACATTGTCAGAGTTGAAGTTACGGATCCATGATCTTTGGAATGCCCTGTTAGGGGAGAACTTTGTTTTCAGCTTCAGAAACACATTGGAAATAATGGTGTATAGCAAACTGGAAGAAAGCTATGGCCAATGGAGATGGAAGCTGAGAAAACACGCACTGGAGGTACAAAAGACTTTGCACAACCAAATCATGAGCAAGAAAATACAGGATGTGAATCAATCAGAGCTGAACAAGGACTTTGATAAGGTCTACAACccactgaaaactgaaatagaaaAGTATTTCAAGGAGCAAAAGTATCCAGAGCTCTTAATAAAGTGGAAGGTGAGCATAGAGAAGAGATTTGAAGTCCTTAACAAGGACCTTATTGCTGAAACAGTAGACCAATGCAAGGTATTAATCAGTCTCAAGCAAAGCCAAGCAGATCTGGACAACAGGAAATTAGAATATGAAGCACAATTGCTTTCAATGAGCAAAGCCTTGGCCTCTACACTAAAGGAGCAGATGCTCACTGATGAGAAGGTGAGGCAGGAGTTTGACAAGCTCTGGGTGGAATGGGTGGCCAAGGTCTCCTCAGAGAAACCCCCTGAGAAAGATGCTGATATAAAATCTGCAGTGGACAACATCCTACTACAGACTTTCAGCACAATAGCAGACAATAGTAATCAAATTGCCAATAAGAAAACACACTTCAAGTTTAATAAGACAAAACACATTGATCAGAGCTGGAAGCAGTGGGCACGTTCTACGTGGAACAAATTTACTCATAAAGAACCGCCATTGGAGACTATTGGAACTGAACTGACAAAACGAATATTCACTAAGGTCTCAGAATACATTGATGAGAAGCAAGAGGAGAAGATGGGTTTCAATGAAAACTTCATCCACCAAATATTAGATCAGATAAAAAGTGAGATATCTGAATCAGAGAAATCTTTACAGTACATCCAGTTCACAGTTCAGTACAGATTTGAAATATCGGTGCATCTCTGTACCTCAGCAATTACACGGTTTGAGAAAATGCACGCAGCCTTCATGAGAGCCAATGACCCGCTGACATACCTCAAGAGTAAGAGAGACCAGTATCTTGATATTTTTAAGAACTTTTGTGAAGGAGCTTCATCTATTACATTCTTTGTTGATTTTCTATGCAAACAACTCGAACCATTAATCCAGCAGGAAGCATATGACAAAGTCTTCATTGGTATAATAGGAGAAATGAAATCtaacaataaaatgttcaatGGTAACAGATCCAACTTGGAAAACCACATACTGAAGCAACTGGCTGAGAAAAAAGATTTTGATCTGTATATGGAGTACATTAACCATCCAAAGGAATATTTTGCTAAATTCATAAGCGAACAGGTCGAGGAATTCTGCAGAGATCGCAAGAAAATATCGGGAATGctcaatgaaaaacagacagactTGATAGagtgtattttaaatctgaGCAAAACTGTAACTACAGCTGTGATggagaaaaaagggaaagcCTCAATGTGGCTGGATGAGTTCTGTAGAGAAATTAACATAGGACTCTCGAGAGATGACCtaaaaaacattgaaagagAAGACATCGCAGACCTTGGGTTTCTTAAAGACATGATGGCCAAATCACTGAGGGAGAtgctggaaaatgtaaaaaaggaaaatagcCGCAAACCTCAATTTGACTTGAAAATGTTCAGTAAGGACCCTGCTGTACAGCTAGGTTTGATATTTGAAGGGTGCTGGGAGCAGTGTCCCTTCTGCAAAGCTGTTTGTACAAATACTGTCGCTGATCACCCTGATGATCACAGTGTTCAGTTTCATCGTCCTGAAGCTTTAGCTGGCTGGCACTACTTATTTTCAGGTGAATTTTCTATTGACTTTTGTACCAGTTCAGTTATTAGTGATGGGAGTTTCATACCTGCTGAAAAAAGCTTATTCCAAAGTgtcccttttaaaaaatacaaagacgCTGGTCCTCCATAcaataaatggaaaattactGGAGACAACAGTGCCAAGAACTACTGGAAATGGTTCATTCATACATTCCGTTCACAGCTGGAGggaagatttaaattaaaatttgttGGAAAAGGTACAATCCCTAATGATTGGAAAACAATTACAGAAGCGGATGTAATGGAAGAGCTGGGG

Function

GO:

id name namespace
GO:0033993 response to lipid biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006432 True 7184 mRNA 0.41 4 4254334 4266243

Neighbor

gene id symbol gene type direction distance location
AMCG00006424 ino80e coding upstream 64248 4187593 ~ 4190086 (+)
AMCG00006423 NA coding upstream 69024 4179050 ~ 4185310 (+)
AMCG00006412 NA coding upstream 102643 4147704 ~ 4151691 (+)
AMCG00006420 NA coding upstream 119768 4133868 ~ 4134566 (+)
AMCG00006411 LOC108414231,LOC106024139,LOC101061046,LOC101068669,LOC105419728,LOC105419724,LOC105419151,LOC105416979,LOC107747774,LOC105419136 coding upstream 154616 4091688 ~ 4099718 (+)
AMCG00006433 NA coding downstream 85409 4351652 ~ 4360196 (+)
AMCG00006438 NA coding downstream 175718 4441961 ~ 4450469 (+)
AMCG00006446 NA coding downstream 222254 4488497 ~ 4496374 (+)
AMCG00006444 NA coding downstream 230163 4496406 ~ 4516083 (+)
AMCG00006442 NA coding downstream 275869 4542112 ~ 4562075 (+)
G109597 NA non-coding upstream 23850 4230234 ~ 4230484 (+)
G109575 NA non-coding upstream 85228 4168084 ~ 4169106 (+)
G109573 NA non-coding upstream 95143 4157736 ~ 4159191 (+)
G109572 NA non-coding upstream 97365 4156442 ~ 4156969 (+)
G109571 NA non-coding upstream 98128 4155964 ~ 4156206 (+)
G109656 NA non-coding downstream 48388 4314631 ~ 4316465 (+)
G109660 NA non-coding downstream 62626 4328869 ~ 4329278 (+)
G109662 tubb,LOC108432309 non-coding downstream 68080 4334323 ~ 4335450 (+)
G109655 NA non-coding downstream 107905 4374148 ~ 4377377 (+)
G109713 NA non-coding downstream 202148 4468391 ~ 4473008 (+)
AMCG00006413 NA other upstream 86382 4159523 ~ 4167952 (+)
G109570 NA other upstream 98585 4152816 ~ 4155749 (+)
G109538 NA other upstream 290338 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 389602 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 605423 3637743 ~ 3648911 (+)
G109714 NA other downstream 210691 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 258563 4524806 ~ 4527738 (+)
G109781 NA other downstream 758652 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 814638 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 828028 5094271 ~ 5107022 (+)

Expression


Co-expression Network