AMCG00006438


Basic Information

Item Value
gene id AMCG00006438
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4441961 ~ 4450469 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006438
CGCGCCTGCAGTTCTCAATGCGCCCAGCAGGTGGACACAGACGCCACGCATTCAGATTActgTGTGGCAGCAGCAGGAAGGGTCTGCAGCTCAAATCCCCGGGAACTCGCGCGTTGTGAAGTCAGATGATCCAAGTTACTCTTTGATGAAGGAAAAAGCGCAGAGGATCTTGGAGAGCAAGGAGGAGGACCGAGCACCGAAAAAGGACCGAAAAAAGGGTCTGCACGCCCGTGTGAAGAGCAGACCCCGCTGTGTTTGTATTGCAGGACCGGGCAGGACTCGCCGCTGCGGAGGTATTGCGTTTCCACAGTGCAGTTACGATGTCGGATTAACGCAAGAGTCGTGGTTTTCGATGCATTTAATCCAGTCGTGGCGTGGGGTGGTGCGGGAGCGCAGGTCTGACAGGGATTAGTCGGTTAACGTCCTGCTGAGTCGTACGGGACACAGTGCGGGTTTGGGGGGTTTCGCGTCCAGATCCAGGCGACGTCCCGGCTGTCCGGGGGCATCTGTGACCCCAGTGCCGCGCAGGGGCCGGGCAGGGCGGCTCAGGTatttggagaagaaaaacaggagGGGCAGCGACTTCAGCGAGTGTAAGATGACGGCGCTGCGCTTAAACCTCAGTCCCCTCAAAGAGCCGCTGGGCTTCATCCGGCTCCTGGAGTGGATCTTCTCCATTTTTGCCTTTGCTACCTGCGGAGGCTACAGTGGGAAAAACATAGTGTCTCTCTTCTGCAAGGATGGCGGAAATGAAACCTTGAACTTCAGTTTTTCCTACCCCTTCAAGCTGAGCCAGGTGTTGCTGGTGGCGAACAACTCTGCGTACTGTAACCACACTGTCCCGGAGACGCACCTGGTGGGCGACGCCTCCTCCTCGGCCGAGTTCTTTGTTGCCATCTCGGTTCTCGCGTTCCTCTACTCCATGGCTACCTTGGTCATATATCTGGGGTACATGCACATCTACAGGGACTCCAACTTTGGGCCGGTGGCTGACTTCCTGCTCACGTCCACCTTTGCCGTCCTCTGGCTCGTGTGCTCCTCGGCCTGGGCCCGCGGCCTGCACAACGTCAAGTACGCCACCAACTCCGAGGGCATCGCGGCCACCCTCTCGCTGTGCGGGGGGGACGCCTCCTGCCTCGTCACGGACCACGCTAGTATGCGGAGCCTGAATGTGTCTGTGGTGTTCGGCTTCCTCAACATGATCCTGTGGGCCGGCAATGCCTGGTTCCTGTACAAGGAGACGAGCTGGCACAAGCCCCCCGGGCCCAACGCTGCACAGCCCAGCGCGGTCCGGACGCCCCCCGGGGCCGGGATATAACCCCGAGGACACGGCACAGGCTCAGTGCGGCGCTGCAGCCTCCTCGGCCCAGAGCAGCCTGCGGAGCGGCTCTCGGCCACGCGGGCGGTGCGGACTGAGCCCGGCCGGTACCACTGCGCGGGCCCTGGAGGAAGGCTTTGCTGTTAATTCCTAGTACCCTGCCTGCCTGCGTCCCTTAACCATGGCAAACGAAAGGAAGCCCACGCTTCCAGTTGCAGAAGTCGCGTTTTGATGATGTGATGCGTTCGTTCCTGCGCTTTGCAGGAGCCCTTCTGTTCTTTAAGATATGAATCACTCTCTAGTTCACCTTCTCACTTTTCCCCTGATGAAGacagtgttattattgttgttattattttaattttgttgaaggcttttaaaaaaacaccaacacaagCATTGTCTTTCACGAGAATCGAAgttgactattattattattattattactacagtaTGCAtccttgtgtttgtttccaatGGCACCATACCTATacttgactttttatttttcgaATTCGTATCTTTAAAagtgcatgttttaaattgacTTAAACTGTcgtattttgtacattttgttagcGGTTTTGAGCTTGAAGAGACCTGAACACAATGACTAAAGCATAACAATCAGTCCTGCAGAGTGAAAGCCAACATCGTACACCATCGAATATAAGTAGGATTCATCGGTTGCTAATTTAAAGACTCGGAggtataaaaacatgtaatggaGACCCACCAAAAtgattcatttctgtttttatgatttGGTTCTGCCGTGTTTGTGTGGCTGGTGGCAGTAGCAGgtatgatttttgtatttagttgttTGAAGTCGCCAGCCTGTTTTTTACATTCCTgctttgtttgctgtttttacaCTTGAAATGTTTGGATCATTAATCCACTTCTTTATATTGATTACGCTATCTTGTTTCTgaactatttcaaaataataaaaataattcgaATTTGGCATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006438 True 2297 mRNA 0.52 7 4441961 4450469

Neighbor

gene id symbol gene type direction distance location
AMCG00006433 NA coding upstream 81765 4351652 ~ 4360196 (+)
AMCG00006432 NA coding upstream 175718 4254334 ~ 4266243 (+)
AMCG00006424 ino80e coding upstream 251875 4187593 ~ 4190086 (+)
AMCG00006423 NA coding upstream 256651 4179050 ~ 4185310 (+)
AMCG00006412 NA coding upstream 290270 4147704 ~ 4151691 (+)
AMCG00006446 NA coding downstream 38028 4488497 ~ 4496374 (+)
AMCG00006444 NA coding downstream 45937 4496406 ~ 4516083 (+)
AMCG00006442 NA coding downstream 91643 4542112 ~ 4562075 (+)
AMCG00006443 grm8,grm8a,LOC108412277 coding downstream 120055 4570524 ~ 4571515 (+)
AMCG00006450 LOC107389496,LOC106561032 coding downstream 164723 4615192 ~ 4632996 (+)
G109655 NA non-coding upstream 64584 4374148 ~ 4377377 (+)
G109662 tubb,LOC108432309 non-coding upstream 106511 4334323 ~ 4335450 (+)
G109660 NA non-coding upstream 112683 4328869 ~ 4329278 (+)
G109656 NA non-coding upstream 125496 4314631 ~ 4316465 (+)
G109597 NA non-coding upstream 211477 4230234 ~ 4230484 (+)
G109713 NA non-coding downstream 17922 4468391 ~ 4473008 (+)
G109721 NA non-coding downstream 68448 4518917 ~ 4521249 (+)
G109767 NA non-coding downstream 472663 4923132 ~ 4924794 (+)
G109779 NA non-coding downstream 567620 5018089 ~ 5020403 (+)
G109780 NA non-coding downstream 570827 5021296 ~ 5022178 (+)
AMCG00006413 NA other upstream 274009 4159523 ~ 4167952 (+)
G109570 NA other upstream 286212 4152816 ~ 4155749 (+)
G109538 NA other upstream 477965 3963597 ~ 3963996 (+)
AMCG00006393 ppp1r11,LOC107711309 other upstream 577229 3858934 ~ 3864732 (+)
AMCG00006387 NA other upstream 793050 3637743 ~ 3648911 (+)
G109714 NA other downstream 26465 4476934 ~ 4477570 (+)
AMCG00006445 NA other downstream 74337 4524806 ~ 4527738 (+)
G109781 NA other downstream 574426 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 630412 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 643802 5094271 ~ 5107022 (+)

Expression


Co-expression Network