AMCG00006441


Basic Information

Item Value
gene id AMCG00006441
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4454881 ~ 4476647 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006441
ATGTATGAGATGAGATTCAACCCTCTGAGCCTGAGACCAGGCAGCATGTGCCTTAAGATGCCGGTGCCGCCCCGAGACAACTGGCTGTCCAGCTCTGGTCATCAGGTTCACAAGCTGCACATCCCCAACACCGAGGAGGCCTGGGCGAACTCTTCTGTCGAGGCGCTGTCGATTCTGCGCAGATCCATTGTGGATGGAGATGTCCAGATGATGGGCCTAGAGTCTACTGCCACTCTTCCACTGGACAGCCCAGCTGGGACAGTCGTGCGGAGGTTCACGGTGGACACAGACCCAGATTCACCACTCGCCCCGGGATTTCCCAGCATAGTGACCACCCAGCCGGTATCTCGGGCCTTCAGTGTGTCCGCACTCTCCTCCAACCTCTTCCAGGTGGTTTGGCTTGGGAACCCTGTGCTGGATTGGCTGAACCCCCCAGAAACTGCACAGCTGCAGATATTTGCTGAAGACACAGCGGGAAACACCGACCTCAGGACTCTCACTGTGGGTTTCACAAGTCCAAGCAACGCACTACTATGTCTGGGGAATCAAGATGAAGTCATTTATCTCAAAGAGCACGAGTCCCTGTCATATCAGGTCAGCGTTTATTCCTCTGAACCGGGCAGTATCCAGTATTATCTCATGCCGAGTACAGTGTTTAAGATCAACAGCGCTGGCGTGATTCAGTCATTGAAGATGTTTGATTTTGAGACTGATCCACACagGACCTTTGGGATAATCCAGATCCCAGAAGAACAGCTGCCTGGCACCGTGGTGGCCACCGTGAGGGCCCAAGACCCCGACGACTTCAACTACGTGGGCTTCCTCCGATACAGCATCAACGACACGAAGTACTTTGCCATTGATCCATATTCGGGGGTCATCGTGGTGACTGTGCAGATGGACAGAGACAAGGCGCCGCTGCGGGACGAGCCGCTCATTTACATCAAAGTCTCCGTTCAGGACTTCTCCCCCAACATTTCCTCCAAGTCCAACAGCACAGTGATCGTGTTCAATGTCACAGACATCAATGACAAGCCCCCGGTCTGCTCTCCCGGCGCCTACAGTGTCATCATCCCCGAAACAATGGCAAACGGTTCCATTGTTGCGAAAGTGAACTGCACCGACGATGACGTTTACCCCATTAACaagaattttacattttgcctGTTATCTGGTTTGGGCAGCAATGACAGGTTTGCCATGCTGTCGCCCGTGTCTCCCGAGATTGTGATTGGACAAGTATCAGTTGTGGACAGAAACTTCCCGTTGGCGAATGTATTGTACTCCTTGGACACGCCCACGAAATGCACAAGCATCTTTTGGTTGAACCCGGGCAGTGGAAACCTACAGGTCACCACTCAGCCGGACTATGAAGTCAGCCAGCAGTGTGTTTTCACGGTGACCGCCAGGGAAATGACGCCAATTGGGACCCTGCTCTCGTGCCACACAACTGTGAGTATCAAAGCAGTTAGGGTGACCGTCAACATCCTCCCGGCCAATGTAGGGAAACCCAACTGCACGCCCATCGTCCAGCACCTGGCGGTCCCACTGAGCCAGCCCATCCAGACGGCTGTGCAGGGCTTCACACTCACCTGCCAAGACAGGGACTCGCCCCCCGCGGCCCTGCGTTATGTCATCTCCTCAGGGAATGTCAACAACCACTTCACGCTCTTGCCCCTCGAGGGCTCAGATACCACAGCGCTGATCCTCGGCATGCCCTTCGATTACTCCTCCGGCCTGGACCGGGTCTGGGAGTACAAACTCGTCATGCACATCATAGACGACAACCTGCTCGAGGCCCGGAGAGGACCCAAGGGGCTCGTCCAGACGGGCACGGTCACCGTCTATGTGCGAGTCTACCAGCCAGGCCTGACCATTCATACCACCACACAGGTCAGTCCAGCAGTACTGTACACAACCCGACACAACTTCATTCATAATGATGTCTTTTCATAA

Function

GO:

id name namespace
GO:0030903 notochord development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006441 True 1956 mRNA 0.54 12 4454881 4476647

Neighbor

gene id symbol gene type direction distance location
AMCG00006439 NA coding downstream 13447 4439800 ~ 4441434 (-)
AMCG00006440 NA coding downstream 23897 4421029 ~ 4430984 (-)
AMCG00006436 NA coding downstream 67570 4376681 ~ 4387311 (-)
AMCG00006434 NA coding downstream 86285 4367250 ~ 4368596 (-)
AMCG00006437 zgc:153426,LOC107393497,LOC106534675,LOC100712088,LOC102780606,LOC103367161,LOC107711200 coding downstream 118699 4335672 ~ 4336182 (-)
AMCG00006448 NA coding upstream 6587 4483234 ~ 4483880 (-)
AMCG00006447 NA coding upstream 7567 4484214 ~ 4492530 (-)
AMCG00006457 NA coding upstream 541148 5017795 ~ 5051191 (-)
AMCG00006456 LOC108436892 coding upstream 586814 5063461 ~ 5067740 (-)
AMCG00006463 LOC107726005,LOC107656401,LOC107711505,LOC107581005 coding upstream 634515 5111162 ~ 5114090 (-)
G109692 NA non-coding downstream 105069 4344387 ~ 4349812 (-)
G109689 NA non-coding downstream 142930 4308173 ~ 4311951 (-)
G109616 NA non-coding downstream 186411 4266827 ~ 4268470 (-)
G109635 NA non-coding downstream 287642 4166951 ~ 4167239 (-)
G109634 NA non-coding downstream 288292 4166328 ~ 4166589 (-)
G109735 NA non-coding upstream 37663 4514310 ~ 4515575 (-)
G109736 NA non-coding upstream 39290 4515937 ~ 4521369 (-)
G109761 NA non-coding upstream 270323 4746970 ~ 4747234 (-)
G109778 NA non-coding upstream 494217 4970864 ~ 4971188 (-)
G109782 NA non-coding upstream 543390 5020037 ~ 5020675 (-)
AMCG00006429 NA other downstream 177726 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 277829 4168050 ~ 4177052 (-)
G109633 NA other downstream 289281 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 296758 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 639364 3730042 ~ 3815517 (-)
AMCG00006476 NA other upstream 1100823 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 1537457 6014104 ~ 6042924 (-)
G110140 NA other upstream 2308666 6785313 ~ 6785851 (-)
G110195 NA other upstream 2601742 7078389 ~ 7107138 (-)
G110507 NA other upstream 4245741 8722388 ~ 8724352 (-)

Expression


Co-expression Network