AMCG00006442


Basic Information

Item Value
gene id AMCG00006442
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4542112 ~ 4562075 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006442
ATGACTCACCGCAGTGCAAGCAAGATCCTCCTGGCCCCAGAGAGCACTTCTGAGAACGGCATTTCCCCCATGAAAAGCCGAGCGCGATGCGTGGACCCCGACCCTGAACTCAGACCCTGGGAGACCCCCACGGTGGGAAGCATGGAGAAATCTCACATCGCTCTGAGGAGGCATTTCCTACGCAACCAGCATGCCGGCAAGACGGACTGGGAGACGGAGGACGGCAAGCCCCGCATCCAGAGAGCCGCGGTGAAGGACAAGTGCTGCCAGACGGACCACCACCACCATGGCTGCTGTGAGCCAGCTTACGCCGTGGAGCCCGGGGACCCGCCTCTACTGCAACAACAGCTCCCGACGTCCAAGTCCGGCATCCAGCAGATCATCGAGTGCTTCCGATCAGGAACCACCCAGCTGAAGCACATACTACTGAAGGAGGTGGACACCATCTTTGAATGCAAGCTGTGCCGCAGTCTGTTCAGAGGCCTGCCCAACCTCATCACCCACAAGGAGTTCTACTGCTTCCCCAGCCTGTCTCCGGCTGACGACTCCCTGGGTGCGAGTGACAAGCAGAGCCAAACCATCAAGGACCTCCTCGAAGCCATTTACCCCAGAAAGGACAAGCAGGAGTTTGTCGTGAGGCTCGAGCCGATCGCGTCCAACCAAAACGCGGTGTTCCAGTTCGTCTCGGGAGAGGATGAGCAGAGCCAGGTCCCGGAGAAGCCCGGCGCGCCCCACGTGCTGGAGGAAATCCCCGTCTCCGAGCGGCCGTCCCCGGGCGAAGCCCCCCAGAGCGAGGAGGCCGCCGAGCCGCTCCTGAAGGAGGACCTGACCGACGAGGAGGTGACAGCGGCTCCGGAGATGGAAAGCGAGGAGCCGTCCCTCCCGCTTACGGAGAGCTACAACAGCGACGGCTCAGACATGAACGTGGCCTGCCACCTGTGCGGGAAGGACTTCAACACCCGGCGCAGCCTGCGGCGCCACGTCCGCAAGGTGCACATGAAGAAGCGGGAGGCAAGGGTGAAGAACACAGAGACCAGGAGTGCCTCCCAAGGCCTGGGGACAATCGGCAAGGGCCGTCCCCGCAGCCTGCTCACGAGCTCGGGGAGGAGCTGCCCCATGTGCAACAAGTCGTTCGCCACCAGGGCCAACGTGCGGAGACACTTCGACGAGGTGCACCGGGGCCTGAAGAGAGACTACATCACGCCAGACATCGCCACCAAGCCGGGGCAGCTACTGTCCCTGGAGAGCAGCCCCTCGCCCCAGAAACCCGCCAACTCCCCGGGGCGCAGGCCGAAGGCGGAGTACAATGTGACAGCGTGCAAGTGCCTGCTGTGCAAGAGGAAGTACACGTCTCCGATCATGCTGAGGAGGCACCTGCGCATCGTCCACAAGATAACCATGCTGGAGAACGGGGCGGCGCCTGTTTCCGGCGGCGGCGGTGGTGCGGAGATCAAAGTGAAACTGGAAGCCTCGGAGATGGTGGATCCCCACGTCGAGTCGTCGCTAGGCAGCCGGTCTCCGCAGAGCGAGTCGAAGCGGGCGGTAGAGCGGAAAGGCGCGCACCCCGGCCCCAAGAGCAAAGCCAAGGTGAGCGACAGCCCCAAGTCCTCCAGTCCCAAAGCAGTGCCGAAAAAGAAGGGGAGAAAGCCCAAGCTCTCTGTGGGCTTCGACTTCAAGCGGCTCTACTGCAAGCTGTGCAAGCGGCAGTTCACCTCCAAGCAGAACCTGACCAAACACATAGACCTGCACACCGACGGCAACGACATCTACATCAAGTTCTACCGCTGCCCGCTGTGCAGCTACGAGACGCGCCGCAAGAGGGATGTCATGCGCCACATCTCTGTGGTGCACAAGAAGACCTCCAAGTACCTGGCCAAGGTCACGGCCAACCTGGAGAGCCGGGCTGTGAAGAAGCCCATGGAGGTGGTGCTGAGCAGCGTGGTGAAGAGGGGCCCCCAGAGGGAGGCGTCCGGCTCCCCGCCCGGCCGGAAGCCGCAGCAGGAAGCGGTGGAGGTCGGGACAGAGGTCAAGTTCACGAGAAGCTTCTCACTCCACACATGCAACAAATGCGGCAAGGCCTTCGCCAAAAAGACTTACCTGGAGCTGCACAAGAAAACGCACAAAGCGAGCGCGCAAAGCGAGCCTGAGGACAACAAAACCAAAGGTCGGAGCACACGATACCTCTGGAAGATGTACAGAACACTTGCACtggatttttaattgttaaaggatatatatatatatatttatatatatatatatatatataccgaatGGGAAACCACTAAAGATGCTGCAGAAGATTCTCCTTGACTGGAAGCCAGTTGGAAGGGTTGTGTGATATGAACCGATGGCGTTGATCAGCAGAGGATGTAACAACATAATGCACTGAGACACTCGTGAAGCAGGCGTTCAGGCCCGTGTGCAGAAGACTGAACACGCTGCACCTTCGAGTTCACTGTGGATTGTACAACGTCTCACCATGGAAGAGACTGGTTCACAACGAAGGTTTTATGATACCTAAAGCTAGggtatatagacacacacacactcacactcactgtgacacacacattgTACCATACATGATCTCGGCTGTGGGTTCAAGGAGCTTTTGGCAGCGCAGTGACTTACACAGGGTTGGGGAGACCAGGGTCCAATTCTTATAAAAGAAGTATACAGATGTCCAAACGTGTGTTGTGATCAATCGACTTATTTCTGATACACAACCGGGTGCCAGGGTCACACACAGCTCATATTGAACATATAGAAACTGGAAGAAACATAATAACTTTCGAGTTacattgacattattatttatgtatcagAAATATGTAGTTTGATCACAATATCTATTGTAAATCtgtatgctttattttcataataaacCTGTGTGTGCAGACAAGGAAAGAACTTTGTATTCAACGCTGTCAACATGGTCACCCGACTCAACACAACTGATGACGAAATTCACACTAATTGTTAGTGGATGGGGTGCCTTTTGTTGGAGGCTTGAGTGTGGTGAAATCGGTGGGAGTCGTCCCTCTGTAGATGTTGGGAAAACAAACCTTTCCTGGGTTCAGTTTGTCCTCTGGAGTTGAAATCCTCCGCAGCCCCCGGGTTCAGTTTTGAGACTGCAAATGTCATTGGATCAAAGTCTTGTACATTTCAATTAGTTCGAAGTGGAAATGAGTCGGCCCGTTTCTCAGTAGTGCTCGTGTAGTGAGAGGGTTGTTACTGTAGACTCACACTTTAAATCTCTTTAGCCACAGTGCGCTTGAGCCAGGTCTTCACAGTATTTCTCTCGCCAGACCACACAGAGATGTTTATTTAAGTGTACAAAGGAGAaggattatttttgtaaaagaaagtattattttgaaagaaatcgTTTTCATTTCGCAGGGTGTGAATGGCTATGTTTCTTCTAGTCAGGTAATGAAGTATGTGCGTTTTGTTTGCAAGGCGAGGGTTTCTGTTCtgttgattatatatatatatatcttcgaAGTGAAGAGATCTTGGACTTCGGTtcaggttgttttgtttatgatttgCCTACTGTGATTGTTGACAGGGTCTTCTGTGTAAAAGACGTTACTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006442 True 3606 mRNA 0.54 9 4542112 4562075

Neighbor

gene id symbol gene type direction distance location
AMCG00006444 NA coding upstream 26029 4496406 ~ 4516083 (+)
AMCG00006446 NA coding upstream 45738 4488497 ~ 4496374 (+)
AMCG00006438 NA coding upstream 91643 4441961 ~ 4450469 (+)
AMCG00006433 NA coding upstream 181916 4351652 ~ 4360196 (+)
AMCG00006432 NA coding upstream 275869 4254334 ~ 4266243 (+)
AMCG00006443 grm8,grm8a,LOC108412277 coding downstream 8449 4570524 ~ 4571515 (+)
AMCG00006450 LOC107389496,LOC106561032 coding downstream 53117 4615192 ~ 4632996 (+)
AMCG00006449 LOC105007228,LOC106561032,LOC107584025 coding downstream 101427 4663502 ~ 4678336 (+)
AMCG00006451 grm8 coding downstream 137591 4699666 ~ 4706437 (+)
AMCG00006453 NA coding downstream 358943 4921018 ~ 4926780 (+)
G109721 NA non-coding upstream 20863 4518917 ~ 4521249 (+)
G109713 NA non-coding upstream 69104 4468391 ~ 4473008 (+)
G109655 NA non-coding upstream 164735 4374148 ~ 4377377 (+)
G109662 tubb,LOC108432309 non-coding upstream 206662 4334323 ~ 4335450 (+)
G109660 NA non-coding upstream 212834 4328869 ~ 4329278 (+)
G109767 NA non-coding downstream 361057 4923132 ~ 4924794 (+)
G109779 NA non-coding downstream 456014 5018089 ~ 5020403 (+)
G109780 NA non-coding downstream 459221 5021296 ~ 5022178 (+)
G109786 NA non-coding downstream 482341 5044416 ~ 5044633 (+)
G109837 NA non-coding downstream 790381 5352456 ~ 5353170 (+)
AMCG00006445 NA other upstream 14374 4524806 ~ 4527738 (+)
G109714 NA other upstream 64542 4476934 ~ 4477570 (+)
AMCG00006413 NA other upstream 374160 4159523 ~ 4167952 (+)
G109570 NA other upstream 386363 4152816 ~ 4155749 (+)
G109538 NA other upstream 578116 3963597 ~ 3963996 (+)
G109781 NA other downstream 462820 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 518806 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 532196 5094271 ~ 5107022 (+)
AMCG00006459 NA other downstream 565282 5127357 ~ 5134715 (+)
G110023 NA other downstream 1416987 5979062 ~ 5982909 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location