AMCG00006447


Basic Information

Item Value
gene id AMCG00006447
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4484214 ~ 4492530 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006447
ATGGACAGCAATGGAGACAGAAACCTGCAGATTCTCACTGTCTATCTCACCGATGTGGACGAGCCGCCAGTCTTCTGGGACAACCAGCCAATCATAGTAATAATGCCTGGTTTTCATCTCCTTCTTTCCAGTACCTCGAGAATGTACAAGATTGCAGAGGAGTTGCCTCCCGGGACGGTGGCTGCTAATATCACCGCTGTCGACCCAGATGGCTTTAATTATATCGGTTATCTCCTCTACAGTCTGAGTCCCAACGAGTACTTTGCCATCAACAAATACACAGGTGCCATTTACGTGGTGATGCGGATGGACCGTGATTCGAAGCCTCTGAGGGACAGCCCGCTGGTCGATGTGCAGGTGACCGTGAGGGACAGCCCCACGGGCCTGCATTCCAGCTCCATCACAATCACCTTCAACGTGACCGACATGAACGACAACCCGCCCATCTGTCACCCTGGGGCCCTGAGAGTGCAGGTACCGGAGACAGAAGTGACAGGTGCTCTCATTGCCTCAGTGACATGCCAAGATATAGACGTGGACCCTGTGTACAACAATTTCACATTCAAAAGCCTGTCCTGCCTGAACTGCAATAATATGTTTGCCCTGGAACCGCTGGGATCCAGGAACATTGTGTTAAAGGGCAATCTCGACTTCGAGGACCCTAATAATCTGTACGTGGGCAACGAATACAGCCTGGCTGTTGTTGCTGAAGACACAGCTTCTCCTTATATGACCGGTacagtgtatatttatgtgACAACCATCCCCGTGAACGAGTTTCCTCCTGTCTTCCACCCGACTTCCTATGTTTTCCCTGTACATGAATCGAGCGGACCTGGAGCCAGCATTGGCGTGGTGAATGCAACTGACAGGGACTTTCCCATCGTGGGGATAAGGTACTCCTTCATAGCGGGGGGAAGCATGCTTGGTTACAGCAACATATTTTGGATCAATCCAAAATCAGGCTCCATACAGCTCTTGGTGCAACCGGACTACGAAGTGACGCAGCAATACGTCCTGGTCGTACAGGCGGTGGACGGGGACCCCATCAATCCCCTTACCGGCACCGCTACGGTACgcaATAGTAATGTGAACAACCACTTTAGCTTTACTCCCACGGCTGGAACGAACATCACGAGACTGGTACTAAAAGAGGCGTTTGACTACAGTAGTGGGCTGGACAAACTCTGGGCCTACAAACTCACTGTTTTAATAACTGATGATAATCTGCTAGCGGGAGCCTCGCAGCCAAAAGGACTGGTGCAGACGGGTACAATCATAATCAATATCCAAGTTGTGAACCCATATCTGACCACAGTTATAACTACCACAGCTccACATATAACATACGTCACCAGGAAAGAGAACGTCTATTCCCCCACGGCCTGGTATGTCCCTTTCATCATTGCTCTGGGCGCCATGCTCTTGCTCGGACTTCTGGGATACTTGCTGTATCGCCTGGGAAGATATCTGTCAACCAAGGACTGCAGCTGCTGCCTGCCCAGGGCTCAGAAATATAAGGAACCGCTGTGA

Function

GO: NA

KEGG:

id description
K16503 CDHR3, CDH28; cadherin-related family member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006447 True 1533 mRNA 0.51 9 4484214 4492530

Neighbor

gene id symbol gene type direction distance location
AMCG00006448 NA coding downstream 334 4483234 ~ 4483880 (-)
AMCG00006441 NA coding downstream 7567 4454881 ~ 4476647 (-)
AMCG00006439 NA coding downstream 42780 4439800 ~ 4441434 (-)
AMCG00006440 NA coding downstream 53230 4421029 ~ 4430984 (-)
AMCG00006436 NA coding downstream 96903 4376681 ~ 4387311 (-)
AMCG00006457 NA coding upstream 525265 5017795 ~ 5051191 (-)
AMCG00006456 LOC108436892 coding upstream 570931 5063461 ~ 5067740 (-)
AMCG00006463 LOC107726005,LOC107656401,LOC107711505,LOC107581005 coding upstream 618632 5111162 ~ 5114090 (-)
AMCG00006462 NA coding upstream 623186 5115716 ~ 5123628 (-)
AMCG00006470 NA coding upstream 857674 5350204 ~ 5390268 (-)
G109692 NA non-coding downstream 134402 4344387 ~ 4349812 (-)
G109689 NA non-coding downstream 172263 4308173 ~ 4311951 (-)
G109616 NA non-coding downstream 215744 4266827 ~ 4268470 (-)
G109635 NA non-coding downstream 316975 4166951 ~ 4167239 (-)
G109634 NA non-coding downstream 317625 4166328 ~ 4166589 (-)
G109735 NA non-coding upstream 21780 4514310 ~ 4515575 (-)
G109736 NA non-coding upstream 23407 4515937 ~ 4521369 (-)
G109761 NA non-coding upstream 254440 4746970 ~ 4747234 (-)
G109778 NA non-coding upstream 478334 4970864 ~ 4971188 (-)
G109782 NA non-coding upstream 527507 5020037 ~ 5020675 (-)
AMCG00006429 NA other downstream 207059 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 307162 4168050 ~ 4177052 (-)
G109633 NA other downstream 318614 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 326091 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 668697 3730042 ~ 3815517 (-)
AMCG00006476 NA other upstream 1084940 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 1521574 6014104 ~ 6042924 (-)
G110140 NA other upstream 2292783 6785313 ~ 6785851 (-)
G110195 NA other upstream 2585859 7078389 ~ 7107138 (-)
G110507 NA other upstream 4229858 8722388 ~ 8724352 (-)

Expression


Co-expression Network