AMCG00006449 (LOC105007228,LOC106561032,LOC107584025)


Basic Information

Item Value
gene id AMCG00006449
gene name LOC105007228,LOC106561032,LOC107584025
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4663502 ~ 4678336 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006449
ATGGATATTAAAAACTTCAAGAGCTTTTGTTATGAGAGGTCAGCTGATTaccagagaaagaaagaaagagaaaaggtgGTCCAGTGTGACCTTCAAGACGAGTTGAACGCCTTCACCGCCCCGAACACGCACATGACTCCCCTATTCAGTTACTGTAACACTGAAAGAAGCCAAAAGGAATTGATCAAAACTATCGACAACGTCTCCAGACCAGATAGAGGTGGTGTTTGCATCGCACAGTCTCTGAAGATCCCCAGGGAGCCCAAGCCGGGGGAGTTTAACAAGATAATCCTGCGTCTGCTGGAGACGTCCAGCGCCCGCGCCGTCATCATGTTTGCCAACGAGGACGACATCAGACGGGTGCTGGACGCAGCCAAGAGGATCAATCAGACGGGCCACTTCCTCTGGGTCGGTTCTGATAGCTGGGGCGCCAAAATCGCTCCGGTGGTTCAGCAGGAGAAGGTGGCCGAGGGCGCCGTCACCATCCTGCCCAAAAGAGCTTCTGTCGACGgatTTGACAGATATTTTAGGAGTCGATCTCTGGCTAATAACAGGAGGAACGTGTGGTTTGCTGAATTCTGGGAAGAAAATTTCGGTTGCAAGTTAGGATCCCATGCCAAGAAAATTGGCAGTCTCAAGAAATGCACAGCATTTCTGGAGATCAGCTTGGAGGGATAA

Function

NR:

description
PREDICTED: metabotropic glutamate receptor 8 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006449 True 678 mRNA 0.50 6 4663502 4678336

Neighbor

gene id symbol gene type direction distance location
AMCG00006450 LOC107389496,LOC106561032 coding upstream 30506 4615192 ~ 4632996 (+)
AMCG00006443 grm8,grm8a,LOC108412277 coding upstream 91987 4570524 ~ 4571515 (+)
AMCG00006442 NA coding upstream 101427 4542112 ~ 4562075 (+)
AMCG00006444 NA coding upstream 147419 4496406 ~ 4516083 (+)
AMCG00006446 NA coding upstream 167128 4488497 ~ 4496374 (+)
AMCG00006451 grm8 coding downstream 21330 4699666 ~ 4706437 (+)
AMCG00006453 NA coding downstream 242682 4921018 ~ 4926780 (+)
AMCG00006454 NA coding downstream 248507 4926843 ~ 4930909 (+)
AMCG00006452 NA coding downstream 282870 4961206 ~ 4968033 (+)
AMCG00006455 NA coding downstream 337310 5015646 ~ 5016686 (+)
G109721 NA non-coding upstream 142253 4518917 ~ 4521249 (+)
G109713 NA non-coding upstream 190494 4468391 ~ 4473008 (+)
G109655 NA non-coding upstream 286125 4374148 ~ 4377377 (+)
G109662 tubb,LOC108432309 non-coding upstream 328052 4334323 ~ 4335450 (+)
G109660 NA non-coding upstream 334224 4328869 ~ 4329278 (+)
G109767 NA non-coding downstream 244796 4923132 ~ 4924794 (+)
G109779 NA non-coding downstream 339753 5018089 ~ 5020403 (+)
G109780 NA non-coding downstream 342960 5021296 ~ 5022178 (+)
G109786 NA non-coding downstream 366080 5044416 ~ 5044633 (+)
G109837 NA non-coding downstream 674120 5352456 ~ 5353170 (+)
AMCG00006445 NA other upstream 135764 4524806 ~ 4527738 (+)
G109714 NA other upstream 185932 4476934 ~ 4477570 (+)
AMCG00006413 NA other upstream 495550 4159523 ~ 4167952 (+)
G109570 NA other upstream 507753 4152816 ~ 4155749 (+)
G109538 NA other upstream 699506 3963597 ~ 3963996 (+)
G109781 NA other downstream 346559 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 402545 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 415935 5094271 ~ 5107022 (+)
AMCG00006459 NA other downstream 449021 5127357 ~ 5134715 (+)
G110023 NA other downstream 1300726 5979062 ~ 5982909 (+)

Expression


Co-expression Network