AMCG00006450 (LOC107389496,LOC106561032)


Basic Information

Item Value
gene id AMCG00006450
gene name LOC107389496,LOC106561032
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4615192 ~ 4632996 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006450
ATGGCGGAGGGGGGCTCGCGGTCTCGGCAGCTGGCAGGCGAGGTCGGGCTCCAGTCTGGGGAGAAAGTCCTGTATCAATCTCAGACCGAGCACTGGTGTTCATACCCCACGAGGAAGTACAGTGAGGTGCTGAATTTGATCGGGAGTGACAGACAGCTGGAGACGTTGGCTGAGGCCATCCCAGTCAGGGCTGATGTCACTGGCTACAGCCTGGCTGTGGGGATTCAGACGGCACTGGTTGACCTTTTTCATGAAGAAAAAGAGGATATACCTCAAATTAGCTATGCATCTACAGCCCCCGAGCTGAGCGACAACACCAGGTACGACTTTTTCTCCCGGGTCGTGCCTCCCGATTCGTATCAAGCACAAGCCATGGTGGACATCGTCACGGCCATGGGGTGGAATTACGTGTCGACGCTGGCCTCGGAGGGGAACTACGGGGAGAGCGGAGTGGAGGCGTTCATCCAGATCTCCAGGGAGTCTGGTAATACTGCGCACTTAAATGGAGCCCCAGACGATGGGGACAACCGGGCCTGCGCTGTGAGGGAAGAATAA

Function

NR:

description
PREDICTED: metabotropic glutamate receptor 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006450 True 555 mRNA 0.57 4 4615192 4632996

Neighbor

gene id symbol gene type direction distance location
AMCG00006443 grm8,grm8a,LOC108412277 coding upstream 43677 4570524 ~ 4571515 (+)
AMCG00006442 NA coding upstream 53117 4542112 ~ 4562075 (+)
AMCG00006444 NA coding upstream 99109 4496406 ~ 4516083 (+)
AMCG00006446 NA coding upstream 118818 4488497 ~ 4496374 (+)
AMCG00006438 NA coding upstream 164723 4441961 ~ 4450469 (+)
AMCG00006449 LOC105007228,LOC106561032,LOC107584025 coding downstream 30506 4663502 ~ 4678336 (+)
AMCG00006451 grm8 coding downstream 66670 4699666 ~ 4706437 (+)
AMCG00006453 NA coding downstream 288022 4921018 ~ 4926780 (+)
AMCG00006454 NA coding downstream 293847 4926843 ~ 4930909 (+)
AMCG00006452 NA coding downstream 328210 4961206 ~ 4968033 (+)
G109721 NA non-coding upstream 93943 4518917 ~ 4521249 (+)
G109713 NA non-coding upstream 142184 4468391 ~ 4473008 (+)
G109655 NA non-coding upstream 237815 4374148 ~ 4377377 (+)
G109662 tubb,LOC108432309 non-coding upstream 279742 4334323 ~ 4335450 (+)
G109660 NA non-coding upstream 285914 4328869 ~ 4329278 (+)
G109767 NA non-coding downstream 290136 4923132 ~ 4924794 (+)
G109779 NA non-coding downstream 385093 5018089 ~ 5020403 (+)
G109780 NA non-coding downstream 388300 5021296 ~ 5022178 (+)
G109786 NA non-coding downstream 411420 5044416 ~ 5044633 (+)
G109837 NA non-coding downstream 719460 5352456 ~ 5353170 (+)
AMCG00006445 NA other upstream 87454 4524806 ~ 4527738 (+)
G109714 NA other upstream 137622 4476934 ~ 4477570 (+)
AMCG00006413 NA other upstream 447240 4159523 ~ 4167952 (+)
G109570 NA other upstream 459443 4152816 ~ 4155749 (+)
G109538 NA other upstream 651196 3963597 ~ 3963996 (+)
G109781 NA other downstream 391899 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 447885 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 461275 5094271 ~ 5107022 (+)
AMCG00006459 NA other downstream 494361 5127357 ~ 5134715 (+)
G110023 NA other downstream 1346066 5979062 ~ 5982909 (+)

Expression


Co-expression Network