AMCG00006452


Basic Information

Item Value
gene id AMCG00006452
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4961206 ~ 4968033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006452
ATGCAATCACTTTGGAGACGGATACTTTTCCTGCTGGGGGGTGTTGCTGCTCTAGCATATCAGCGCGGTGGCGAGGCGAGGACTAACAGCGTGGGGGCGCGTTATTACGCAGTTGCCCCAGACGAGGACAGATCCGGGTCCGACAGTGTGTGGAGATGGCAGAGACTGCGGGGCCAAGTGGTTGGGGACGCGGGGTATTTAAAGGGGGGATCTACAGGTGTGTCATGGGACAATGTGCTGAGACACCTGAACGCCACCTCGTTTCAAATGCAGACAAAAGCGAAAAGGTCTGCGAACCGGAATTTGTGGTCCGAGTCCCCTGTGGGAAGAGCTGGTGTCTCTGTGGATCGCCGGTCCATTCAGGGGCAACATGGAGAGAAAGCACGCCATGGGACTTTGGATGCAGAGATGTTGGCTGCCATGAAAACACACAGTGGATACAATGAAGCAAAGTCTGTTCCTGCCCACAGACGAGTAGGGCGGAGGACCGGGGGCAACCAGAGGCGCAAAAGAGGTACCAACAGCAGCATGGGCAACGAGAAGAAACCAGAGGACACCAAGCGCACAAAGCTCAAGAAGAGCGTGCATCCTTTCAGACACTTCAACAGATCTTTGGATGCCCCTTTTGCCCCGTGGGAAACCCTGCCCAAACCTCTGGCCCAAAACCAATCCACCGATTTCCCATATGATATGACCACCCACACTTATGGACTGTACACCCTGTCGGGGGAGATGGGGGTCACGCCACCCCTGCTCCCCCTGGAGCCCAAAGGGAAGAAAAACGAGGTCAGGAACCCATTCTACCCGCTGACGGAGGAGTCGTACGGGGCGTATGCCATCATGTGTCTCTCTGTGATCATCTTCACCGTGGGGATCATCGGCAACATCGCCATCATGTGCATCGTGTGCCACAACTACTACATGAGGAGCATCtccaactccctcctggccaacCTGGCCTTCTGGGATTTCCTGAACATCTTCTTCTGCTTGCCCCTGGTCATATTTCACGAGCTGACGAAAAACTGGCTGCTGGGGGAGTTCTCCTGTAAAATCATACCATACATTGAGGTGGCTTCGCTGGGCGTCACCACCTTCACGCTGTGCGCTCTGTGCATCGACCGCTTCCGCGCGGCCACCAACGTGCAGATGTACTACGAGATGATCGAGAACTGCACCTCCACCACTGCCAAGCTGGCCGTGATCTGGATCGGCGCCCTGCTGCTGGCCCTGCCCGAGCTGGTGCTGCGGCAGCTGGTGCTGGAGGCGGCCGAGGCCCCGAACGGCACAGCCTGCGAGCGCTGCGTGGTCAAGATCTCCCCCGAGCTGCCCGACACCATCTATGTCCTCGCCCTCACCTACGACGGCGCCCGGCTCTGGTGGTACTTCGGCTGCTACTTCTGCCTGCCCACCCTGTTCACCATCGGCAGCTCGCTGGTCACCGCCAGAAAGATCCGGCAAGCCGAGAAGGCCTGCGCCCGGGGCAACAAGAAGCAGATCCAGCTGGAGAGCCAGATGAACTGCACGGTGGTGGCGCTGACCATCCTCTACGGCTTCTGCATCATCCCCGAGAACATCTGCAATATCGTCACGGTCTACATGTCCACCGGCGTCCCCCAGCAGACCATGGACCTGCTGCACCTCATCAGCCAATTCCTGCTGTTCTTCAAGTCCGGGGTGACCCCAGTCCTACTGTTCTGCCTGTGCAAGCCCTTCAGCCGGGCGCTGGtggactgctgctgctgctgctgcgatGAGTGCGTGCAGAAGTCGTCCACCGTGACCAGCGACGACAATGACAATGAGTACACCACCGAGCTCGAGCTGTCCCCTTTCAGCACCATCCGCCGGGAAATGTCCGTCTACCAGTCGGTGGGGACGCACTGCTGAGCCGTCAATCACTCCGGACACTGGGTCTTAGGCCTgttattatataatgaaaatcGGCAACGTTTCGCCGTCAAAAAATCGGCGGCACCTGCGTGACTTTACTAATAATGAGGTTCTTTTCATATAAAACACCTTTATGTTGTtgttcaattaattttgttagttttttctttgcCTAGTCATTAACGTGGGTGCTTTTTTAATGAGGGCACAACATTACATTATCCGATAGTCGCCTTACATGTACGTTTCGTTTCTTCCACTTTGGTTCtcatgctttttttattttcctgttttgcaCGTGCAAACAACGTTTGCCTTacgtatttaaaacattgtattgaaAGTAATATATTGAACATGGCTGGTCGTAGTGTAACGTATTTTGAAATTGGTGATTCTTGTGAATCAGTGATGAAGTAATTTTAGATCCCTTGCTATGTGAGTTTTTTAGTTCTATAACACTCTAAACCGAGacatatttctgttatttaaagCAGAAGTCCATTAAGCTTCTTCATTTCGTACTTTGCTCTTTCTTTATCGTTTCAGCAACACTTGTCAGAATACATTGatttttacagaaatgtgaatCTGCTGGGTCAGTGCGTAGaagattattttcatttgggGGGAGTAGTGAGAGGAACAGGATGGGTACATCAGTGACTTTAAAATCTCTATTTTTTAGTTTAGGATGAactgtttttaacatttgttttgtattatttatcacaTCAGAACTGTGTTTGTCGAtacaga

Function

GO: NA

KEGG:

id description
K04243 GPR37; prosaposin receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006452 True 2652 mRNA 0.52 2 4961206 4968033

Neighbor

gene id symbol gene type direction distance location
AMCG00006454 NA coding upstream 30297 4926843 ~ 4930909 (+)
AMCG00006453 NA coding upstream 34426 4921018 ~ 4926780 (+)
AMCG00006451 grm8 coding upstream 254769 4699666 ~ 4706437 (+)
AMCG00006449 LOC105007228,LOC106561032,LOC107584025 coding upstream 282870 4663502 ~ 4678336 (+)
AMCG00006450 LOC107389496,LOC106561032 coding upstream 328210 4615192 ~ 4632996 (+)
AMCG00006455 NA coding downstream 47613 5015646 ~ 5016686 (+)
AMCG00006461 NA coding downstream 111717 5079750 ~ 5090677 (+)
AMCG00006458 NA coding downstream 171509 5139542 ~ 5149792 (+)
AMCG00006468 NA coding downstream 188565 5156598 ~ 5181731 (+)
AMCG00006464 NA coding downstream 241995 5210028 ~ 5231466 (+)
G109767 NA non-coding upstream 36412 4923132 ~ 4924794 (+)
G109721 NA non-coding upstream 439957 4518917 ~ 4521249 (+)
G109713 NA non-coding upstream 488198 4468391 ~ 4473008 (+)
G109655 NA non-coding upstream 583829 4374148 ~ 4377377 (+)
G109662 tubb,LOC108432309 non-coding upstream 625756 4334323 ~ 4335450 (+)
G109779 NA non-coding downstream 50056 5018089 ~ 5020403 (+)
G109780 NA non-coding downstream 53263 5021296 ~ 5022178 (+)
G109786 NA non-coding downstream 76383 5044416 ~ 5044633 (+)
G109837 NA non-coding downstream 384423 5352456 ~ 5353170 (+)
G109933 NA non-coding downstream 578174 5546207 ~ 5546436 (+)
AMCG00006445 NA other upstream 433468 4524806 ~ 4527738 (+)
G109714 NA other upstream 483636 4476934 ~ 4477570 (+)
AMCG00006413 NA other upstream 793254 4159523 ~ 4167952 (+)
G109570 NA other upstream 805457 4152816 ~ 4155749 (+)
G109538 NA other upstream 997210 3963597 ~ 3963996 (+)
G109781 NA other downstream 56862 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 112848 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 126238 5094271 ~ 5107022 (+)
AMCG00006459 NA other downstream 159324 5127357 ~ 5134715 (+)
G110023 NA other downstream 1011029 5979062 ~ 5982909 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_04384117_04388414 GPR37A coding CI01000330 null 4383915 ~ 4388465 (+)