AMCG00006455


Basic Information

Item Value
gene id AMCG00006455
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5015646 ~ 5016686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006455
ATGTGGACGGGCCGCCGGCGAGAGAGTCCGCGGATGCGCCCCAGCCCGAGCCCGAGCCCCGGCCCGCCCCAGCAGCCCCGGCCGAGGGATCTGTCCAGTCCTGAAAGCGCAGGGAAATCAATGCACAGCCTGCCGGCGTGGATGCGCCTCTATTTCTACGGCATGCACGGCATCACGCTGGACATCCTCATCTCCTCGGCGGACACCTTCGCCCGGACCGGCGACTTCAAAATGCTGGGCTTCTCCTCACCCTACCTGTGCCTGGCGCACTCGGCCACCCACTTCGCCCTGGAGCGGCTGTACCTGCGCAAGAGCCGCTTCCTGGGGCGCCCGGCCGTGTTCAGCTACATCCTCTACCCGTGCGTGTACGTCGCGCTGCAGGTGCTGCTGGGCAACACCATGGCCGACATCAATCACGTCCGGGGTGTCTCGGCCGTGCATCTGGCTTTCCAGTACCTCGTCGCCCTCTTCTACTCCCAGGTGTTCCTCGGCGGCTTCCTGCGCCTGCAGTACCGGGCCTCCGAGACGCCGGCCGCCGGGGGGACCGTGCAAGGGCTGCCCGGCGCGGTGCGCTTCCTGTTCTTCGGCATGCACGGCTTTCTGGACGAGGTCATCTTCACGTCCCTCTTCAACCTGGTGGAGAAGTCCGACCGGACCTTGACGGGCCACACGTCGCTCTGGTCCTTCTTCATGTACGGCAGCTGCAGCTTCGTGGTGGAGAAGCTCTACGTCCACCTGCACTACCGCCGGGGCTGGGGTACAATGAAGCGGCTGCCCATCTATATCTGCTTCATCTACTCCTGGGAGCTGTGCTGGGGACTGATCCTGCGGCAGTACAACGCCTGCTCCTGGGACTACTCGCACTACCCCCTGAATTTCCAGGGGCTGGTCACGCTGCTCTACCTGCCCGGCTGGATCTGCCTGAGTCTGTACCAGGACGTGCTGTCCAACGTGCTCCTGCGGGTGCAGTGCGCCCAGGGCCAGCCCGGCCGGGGCGCCGTGAGCAATGGGCGGCAGTGTGCGGGGCATGCGGCCCAATAA

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006455 True 1041 mRNA 0.66 1 5015646 5016686

Neighbor

gene id symbol gene type direction distance location
AMCG00006452 NA coding upstream 47613 4961206 ~ 4968033 (+)
AMCG00006454 NA coding upstream 84737 4926843 ~ 4930909 (+)
AMCG00006453 NA coding upstream 88866 4921018 ~ 4926780 (+)
AMCG00006451 grm8 coding upstream 309209 4699666 ~ 4706437 (+)
AMCG00006449 LOC105007228,LOC106561032,LOC107584025 coding upstream 337310 4663502 ~ 4678336 (+)
AMCG00006461 NA coding downstream 63064 5079750 ~ 5090677 (+)
AMCG00006458 NA coding downstream 122856 5139542 ~ 5149792 (+)
AMCG00006468 NA coding downstream 139912 5156598 ~ 5181731 (+)
AMCG00006464 NA coding downstream 193342 5210028 ~ 5231466 (+)
AMCG00006467 NA coding downstream 227092 5243778 ~ 5301376 (+)
G109767 NA non-coding upstream 90852 4923132 ~ 4924794 (+)
G109721 NA non-coding upstream 494397 4518917 ~ 4521249 (+)
G109713 NA non-coding upstream 542638 4468391 ~ 4473008 (+)
G109655 NA non-coding upstream 638269 4374148 ~ 4377377 (+)
G109662 tubb,LOC108432309 non-coding upstream 680196 4334323 ~ 4335450 (+)
G109779 NA non-coding downstream 1403 5018089 ~ 5020403 (+)
G109780 NA non-coding downstream 4610 5021296 ~ 5022178 (+)
G109786 NA non-coding downstream 27730 5044416 ~ 5044633 (+)
G109837 NA non-coding downstream 335770 5352456 ~ 5353170 (+)
G109933 NA non-coding downstream 529521 5546207 ~ 5546436 (+)
AMCG00006445 NA other upstream 487908 4524806 ~ 4527738 (+)
G109714 NA other upstream 538076 4476934 ~ 4477570 (+)
AMCG00006413 NA other upstream 847694 4159523 ~ 4167952 (+)
G109570 NA other upstream 859897 4152816 ~ 4155749 (+)
G109538 NA other upstream 1051650 3963597 ~ 3963996 (+)
G109781 NA other downstream 8209 5024895 ~ 5025906 (+)
G109795 wasl,wasla,LOC105018628 other downstream 64195 5080881 ~ 5098698 (+)
AMCG00006460 wasl,wasla,LOC107698525 other downstream 77585 5094271 ~ 5107022 (+)
AMCG00006459 NA other downstream 110671 5127357 ~ 5134715 (+)
G110023 NA other downstream 962376 5979062 ~ 5982909 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_03613544_03614533 NA coding CI01000066 null 3612721 ~ 3614554 (+)