AMCG00006456 (LOC108436892)


Basic Information

Item Value
gene id AMCG00006456
gene name LOC108436892
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5063461 ~ 5067740 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006456
GAAGACTTCGCTGATTCATGTGGACCTGTGTGCCATGAATGCCGTTCACCCCGTGCTCTTCGTTGGCTGGCTAGCTTGTGTGCACTTCATGTGGGATGCCTCATGCCAGCAGCTCAAGCCTGCCAGGGCCCCTCTTCTCCAGCACAAGCCCTTCATTGTGGTGTGGAACGCTCCCACAGAGTCCTGCCGGCTCCGCTTCAAGGTGGACCTGGACCTCAGCATATTTGACATCGTCACCAACCTGAACGAGACCCTGAGTGGACCCAACGTCACCATATTCTACCACACTCACTTAGGGTACTACCCCTTCTACTCAGAGGAGGGGAGGCCGGTCAACGGTGGTCTCCCGCAGAACCAGAGCCTCACCAAGCACCTGAACAAGGCGAGGAATGACATCGACCGCTTCATACCTTTCAAGGACTTCAGGGGACTGGGGGTCATTGACTGGGAGAACTGGAGACCCCAGTGGGTCAGGAACTGGGGTGCCAAAGACGTGTACAGGAACAAATCCAAGGAGCTGATCAGGAGACTTCACCCCCAGTGGCCCGACAGCAAGGTGGAGCAGGAGGCCAAGGAGGAGTTCGAGAAGGCTGGTCTGACCTTCATGAACACAACCCTGGCGCTGGCGGAGAGCAGGAGACCCACTGGCCTTTGGGGTTTCTACCTTTACCCCGAGTGCTACAACTATGGCTACAAGCAGTACCCACAGAAGTACACGGGCGAGTGTCCCAACATTGAGCATGTGCGCAACGACCACTTGATGTGGCTGTGGAAGGAGAGCACCGCGCTGTACCCGTCCATTTACCTCGACTACGAGCTCCAGTCCTCACCCAACACGGTGAAGTTCGTGCACTATCGGGTGAAGGAAGCCATGAGGATCGCATCCATCGCCCGCAGTGACTTCATGCTGCCAGTCTTCGTTTACTCCAGGCCGTTTTACGCTTACACCTTTCAAGTCTTATCGGAGATTGACCTGATCCACACCATCGGAGAGAGTGCAGCACTGGGGGCAGCCGGGGTGGTCCTATGGGGGTCTTCTGTGTATGCAAGATCCCAGCGGTACATCGACGGGCCACTGGGGCACTATGTCATCAATGTGACGGCGGCGGCAAAGCTGTGCAGCAAAGCCCTGTGCAAGAAGAATGGCAAGTGCATCCGCAAGAGCCTGGACAATGGGGCCTACCTGCACCTCAACCCCCGCTTCTTCAGGATCAAGAGCGACTCCGGCAGCCGGGGCACCAGGTTCTTCGTCAGCGGACACCTGACCAGTGAGGACATGTGGGCCATGAAGACCAAGTTCACCTGCCAGTGCTACCAGGGCTGGGCGGGGATTTTCTGCGAGGTGCCCGAGTCCTCGAGGGTCGTAGTCTGCCGTAAGCAACAGATCCTGAGAGACGTGCTAGAGGGactttctttgcatttttcctGCCTTTCTGTGATTATCTTTCTCTGCTTATGCCTCGTCGTAGTGGACTTGAAGGCAACCAACATG

Function

NR:

description
PREDICTED: hyaluronidase-like

GO:

id name namespace
GO:0006952 defense response biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004415 hyalurononglucosaminidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006456 True 1492 mRNA 0.57 4 5063461 5067740

Neighbor

gene id symbol gene type direction distance location
AMCG00006457 NA coding downstream 12270 5017795 ~ 5051191 (-)
AMCG00006447 NA coding downstream 570931 4484214 ~ 4492530 (-)
AMCG00006448 NA coding downstream 579581 4483234 ~ 4483880 (-)
AMCG00006441 NA coding downstream 586814 4454881 ~ 4476647 (-)
AMCG00006439 NA coding downstream 622027 4439800 ~ 4441434 (-)
AMCG00006463 LOC107726005,LOC107656401,LOC107711505,LOC107581005 coding upstream 43422 5111162 ~ 5114090 (-)
AMCG00006462 NA coding upstream 47976 5115716 ~ 5123628 (-)
AMCG00006470 NA coding upstream 282464 5350204 ~ 5390268 (-)
AMCG00006471 NA coding upstream 368803 5436543 ~ 5483801 (-)
AMCG00006473 NA coding upstream 442849 5510589 ~ 5513330 (-)
G109782 NA non-coding downstream 42786 5020037 ~ 5020675 (-)
G109778 NA non-coding downstream 92273 4970864 ~ 4971188 (-)
G109761 NA non-coding downstream 316227 4746970 ~ 4747234 (-)
G109736 NA non-coding downstream 542092 4515937 ~ 4521369 (-)
G109735 NA non-coding downstream 547886 4514310 ~ 4515575 (-)
G109815 NA non-coding upstream 68778 5136518 ~ 5136744 (-)
G109875 NA non-coding upstream 277943 5345683 ~ 5347227 (-)
G109878 NA non-coding upstream 341600 5409340 ~ 5409571 (-)
G109916 NA non-coding upstream 367197 5434937 ~ 5435764 (-)
G109995 NA non-coding upstream 734832 5802572 ~ 5803261 (-)
AMCG00006429 NA other downstream 786306 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 886409 4168050 ~ 4177052 (-)
G109633 NA other downstream 897861 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 905338 4152816 ~ 4158123 (-)
AMCG00006398 NA other downstream 1247944 3730042 ~ 3815517 (-)
AMCG00006476 NA other upstream 509730 5577470 ~ 5603733 (-)
AMCG00006491 NA other upstream 946364 6014104 ~ 6042924 (-)
G110140 NA other upstream 1717573 6785313 ~ 6785851 (-)
G110195 NA other upstream 2010649 7078389 ~ 7107138 (-)
G110507 NA other upstream 3654648 8722388 ~ 8724352 (-)

Expression


Co-expression Network