AMCG00006458


Basic Information

Item Value
gene id AMCG00006458
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5139542 ~ 5149792 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006458
cacTGTGATTCACTAATCTCACTAAGGGCTCTTGTCTCCTCGGCCGCTCAGAAGACTAAAACAATAAAGATTTATTGTTAACTCGGAATGGGCCTGATTTTTAGTTAATGGGTAAAGGTGACAGGTTAGAGAAAGATTAATCAGGGCTGAGTATTTAGTGGGGTTAGGAGGCGAGGAGGAACAGTAGCCGGACTCAGGTCAGAGAGATGGGTTTCCTCGCCAGGCTGTGGGCTGTGCGCCGATTCCTCGTGGTTGTCCTCACTCCACTCCTGCTGCTGCCTCTGCCACTGCTGGTCAGGACTAAAGTGGCAGAATGCGCTTTCGTCCTGTTCCTCATGGCCGTGTACTGGCTGACAGAAGCAATGCCTCTCGCAGTGACGGCTCTCCTTCCCGCCCTCCTGTTTCCGCTGTTCGGCATTTTGATGTCATCTCAGGTTGCATCTGCCTATTTCAAGGACTTCCACCTCTTGCTGATGGGGGTCGTCTGCTTGGCCACATCTATCGAGAAGTGTAACCTGCACAAGCGCATTGCGTTGAAGTTGGTCTTGCTGGTTGGAGTGAACCCTGGCTGGCTGATGCTGGGGTTCATGGTCAGCACGGCGTTCCTCTCCATGTGGCTCAGCAACACGACCACAGCTGCCATGGTGATGCCCATTGTGGAGGCTGTCATTCAGCAGATCCTGCACGCCGAGGCGGAGGTCAGCGCTGTGAGGATGACGCAGATCAATGGAATCGTAAACCAAGGCCTGCAGCTCAATGATGAAGAGAAAGCTGAGAAAAGCAAGGAAATATTAagTAACGAAGTTGGACATAAGGTGGTGGTGACTGTAGACCACGAATACGCCTCTCCGCAGACCGCAGTACCCATTCCCCAAACTGAAGGGAAATACGGCAGCCGCAAGGACCACATGCTGTGCAAGGGCTTGTCGCTGTGTATCGCCTACTCGTCCACCATCGGAGGTCTGTCCACCATTACTGGCACGTTTTACCCAGACTGCCAGTGTATTAACTTCGGATCCTGGTTTGTTTTGTGCTTCCCGATCACCGTTCTCATTCTGCTGTTCTCCTGGCTCTGGCTGCACTGGGTCTTCTTAGGATCAGACTTCAAGGCGTTGCTGAGCTGCAGGAAAGAGAaatcagaaagagagagggccTCGGCCGAAATCATTGCTAACGAATACAAGAACCTGGGGCCCCTGAGCTACCAGGAGATCGTCACGCTGACCATTTTCATCTTCATGACGCTGCTCTGGTTCACGAGAGATCCCGGCTTCATACCTGGCTGGTCGTCTCTGTTTAAGCAataTAAGGGTTATGCCACAGACTCGTCAGTCGCCCTACTTCTCGGACTTCTCTTCTTCATCATCCCAGCGAATAAGCCAGACAGATATTCCTCAGACGTGTCCTCGTCCTCCACGCTGATCACGTGGAAAGAGTTCCAGTCCTGCATGCCCTGGGAGATCTGCCTGCTTGTGGGGGGAGGTTTTGCGCTGGCCGAGGGCACAAAGGAGTCGGGACTGTCTGTGTGGGTCGGCCAGCAGCTGACTCCGCTTGGCTCCCTTCCCGTGTTCGTGACCGTCATGCTGTCCTGTTTGATTGTGACCTCGGTCACCGAAGTGGCCAGCAACCCAGCCACCATTACAATCTTCTTTCCTATTCTGGCCCCTCTGGCCGAAGCCATCAACATAAACCCACTGTACATCTTGATACCCACGACACTGTGCACTTCTTTTGCCTTCCTACTGCCGGCAGCAAACCCGCCCAACGCCATAGTCTTCACCTACGGACACCTGAATGTCATTGATATGGTGAAAGCCGGCCTGGGAGTCAACGTCATCGGGGTTCTCGTGGTCATGCTGGCCATCTCCACGTGGGGAGAGCCTCTGTTTCACCTGAGCCAGTACCCCACATGGGCCGCCCCCACGGCCTCCTCCAACATCACCGGCCTTTGAGCGGCGAGCCCATCGCCTGAGCGCACAGACCGGCAACGTCCAGCTTCACCGGCTGCTGTCCTGACTTTGAAAAGCCAACAGCCGACACCTCAGccggaaaacaaaatcaaattctGCTGGCATTTCTTTCCTTGAGGGAACAACGGAAGATAAAGAAATACCTTTGAGCCTTGCACCATCAGCCACTCCTCTGTAAAAGCACGGGTGCGAACGCAGTTTGATTGCTATACAGGCAGCAGTGAAGTACTGAGGACTCTGAACGTGTGACCTGAGAGTTACAGGTTTAAATGACAGGTGGGGGACTCAGAGGACAGCCTCAGAGATAAGTCCATTGAGGGAAAAACACCcggcacaaaacagagcagaaacAAACTTCTCCGTCTGTGGTTATTTCGCCACGCGTATCCCTCTGGGCTGGTATTTGACCCACTGATGTAGAAAAAATGTCTTCTCTTCCAATAATTCTTTTACAATTTGGCGGAACTGAGATTGGCTGAAGACAAGACAGTAGAATTAGTCCCCCCCCTCCTTAAAATCTGTGTTTAACAGTAAATGATACGCACACGTCGGGCAGGATTTCGTATTGTAGCAGCGTAAATGTGTGGTTTTGGGACGTTATTTTGAACGTGAGAACAGACTGTAACAGAATTAGGTGAATTATACAGAGCTGTCATCATTTGtcaattataatgtttttggtCTTCATCGGGAATCAGATTAAAAAGTTGTCTCATAAACGGTTTCTAAATTCAACGTGTCAGCTTTGAACGAGTCTTAAATCTTCCTCATGTGTGTTGCATATTATTTCAGCAGGCACCAGAGTGTGACATAGCATTGCTGATGGTGCCTGTTGAGCAATGGCAGTTTACTAAGGGAATGTATCACTCCACGTTAATAAACTGTACCGTGTCCCTTCAGATTTACTCCCGAGACTCGTCCAGCTTTTAAACAATTGCCACAGTACACACGCTATCTGAAGAGTCCatgcacatacaaacatactAGCACTAAAGCATTTTAATAGCTTATGTGCCATTTGTCTgaactgaaattgtatttatattttttcatttgtataaatgtacagcattcaagaaaaaaaaagtactagATCCTATTagcatttattaaatcaaagcttgtaaattattttaatgtataatgtttattttcaatgttagGTATTATTTCCATGGCCTACtagtttgtttgattgtttttaaacaaataaagtgatgcttgtatttga

Function

GO:

id name namespace
GO:0008272 sulfate transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0015382 sodium molecular_function

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006458 True 3201 mRNA 0.49 15 5139542 5149792

Neighbor

gene id symbol gene type direction distance location
AMCG00006461 NA coding upstream 48865 5079750 ~ 5090677 (+)
AMCG00006455 NA coding upstream 122856 5015646 ~ 5016686 (+)
AMCG00006452 NA coding upstream 171509 4961206 ~ 4968033 (+)
AMCG00006454 NA coding upstream 208633 4926843 ~ 4930909 (+)
AMCG00006453 NA coding upstream 212762 4921018 ~ 4926780 (+)
AMCG00006468 NA coding downstream 6806 5156598 ~ 5181731 (+)
AMCG00006464 NA coding downstream 60236 5210028 ~ 5231466 (+)
AMCG00006467 NA coding downstream 93986 5243778 ~ 5301376 (+)
AMCG00006466 NA coding downstream 158705 5308497 ~ 5311416 (+)
AMCG00006465 NA coding downstream 172571 5322363 ~ 5345992 (+)
G109786 NA non-coding upstream 94909 5044416 ~ 5044633 (+)
G109780 NA non-coding upstream 117364 5021296 ~ 5022178 (+)
G109779 NA non-coding upstream 119139 5018089 ~ 5020403 (+)
G109767 NA non-coding upstream 214748 4923132 ~ 4924794 (+)
G109721 NA non-coding upstream 618293 4518917 ~ 4521249 (+)
G109837 NA non-coding downstream 202664 5352456 ~ 5353170 (+)
G109933 NA non-coding downstream 396415 5546207 ~ 5546436 (+)
G109978 NA non-coding downstream 649808 5799600 ~ 5804559 (+)
G110024 NA non-coding downstream 833998 5983790 ~ 5984250 (+)
G110081 NA non-coding downstream 1068739 6218531 ~ 6220086 (+)
AMCG00006459 NA other upstream 4827 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 32520 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 40844 5080881 ~ 5098698 (+)
G109781 NA other upstream 113636 5024895 ~ 5025906 (+)
AMCG00006445 NA other upstream 611804 4524806 ~ 4527738 (+)
G110023 NA other downstream 829270 5979062 ~ 5982909 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 1370073 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 1762084 6911876 ~ 6912254 (+)
G110279 NA other downstream 2503880 7653672 ~ 7655194 (+)
G110445 NA other downstream 3025968 8175760 ~ 8176786 (+)

Expression


Co-expression Network