AMCG00006459


Basic Information

Item Value
gene id AMCG00006459
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5127357 ~ 5134715 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006459
ATGTCTGACGGAAACACTGTCACCCCGGAGCCCCGGGCGGCTGCAGGTGTCCGGCCGGAGGGAGAGCAGAGCCCAGCGGCCGAGGAGGGACCTGCCGGGCCGCCTGCCGACGCGCCCCCCGCTGCGCACACTCTTAAAATCATCCTCCTCCCCGAGGGCCACGTGTGGACCATGGCGTTTGCGATCTCCACGTCAGCCGGGGGTCTGAGGGAGCACTTCGCCAGCGAACTCAAAATCCCAGCCAGCacTGTCATGCAGAAGAGCCAGTCGCAGCAGGTCACTAACACAACATCCACACAGATGACCAAGATAGGGTGCTATGTGTCAGATGTGACGGACAGGCTAATAGAACCGAAAGGATATGTGAGGGCGGACGAACATCACGCCCAGAGACTGAAGGCACgagtgtctgtgtgcgtgtgttcaGAGTGGCGGCGGGAAGAGGAGGAGCGCATCAATGCCACGCTCTCGGGCCCGGAGCGGAAGGCAGCGTTGTGTGCGCTGCTGGAGCAGGAGACGCAGCTCATCGCCTCCATCGGGAGACACAGGGTGGCTGCAGGAGAGGAGAACAGCAAGAAGTCTGTGCAGGCCTTCCTGGAAAAGTGTGCGGAGCCGAAGAAGTGGAAGGCATTTGACGGAAAGATCACGGAAATGGACATGCAGTACACGATCCGAGCCCGGGAGCTACGAGACCTCTACGCCAGCATCAACATGAAGCATCTCGCCCGAGACGAAAGACTCGATGTCCTCCTCACATTGAAACACACAGTCAAGgagCACGACTGCAAGCTGACTCGGGACATAGTGGAGCTGATCGACAGGGAGGCTGATCTTTTAACGAGAGGAGTCAAGGACACTAATCTGGAAGGGCTCAGAAAGAGGATTTCCACGCTGTTCCtgcagtttattaaaatgcCGACCTTTAACCCCGCGTTGACCAAGCTCCTCAAGGTTCCCCAGGATCCGGCACAGCTACGGAAGAACATTCACTTCTGCCCGGGATGCAAGAGCTACCTCCCCCGCTCATCCTTCTCTCTGAAGGCGACGTCGCGCTCGGTGGGGCGCTGTCGGCAGTGCGACCGCCTGGACAACGAGGCGCGGCGCCGAGAGGACTTCTCCCAGTACAGAACCATCCTCCGACTGCTGCGCGATGGAGAGGCCCAGTCCGACAAAGGCAATATCATCGCTTTCTTACTGCAGGAGCAGGACCTGCAGTACCTGGTGGACGTGATCTGGGGCCGCCAGTCCGCTCTGAGCGCGTGCGACGACCTGCATGACCTCGATGAGGCCGTGGCCCACGCCAAACTGGACCAGACCGAGCAGGCCTATGGGGTTGTGTTCATCCGTCAGATCAAGCATAAGCACACTTTGGCGAAGAAACACTTCTCCCAGATCCCAGCCATGGCTCAGTTCTTATGCAGTCAGGAGTCCCGCTCTCAGCGCACCCTTTTAGTGACTCAGCCAGGTAACACGGTGACACAGGCGTAG
>TU137492
TTCTCTGCGCTAAAGCCAGCAGTCATGTGACCGTCTCCATGGCAGAGACACAACAATCGCGGTTACAAGTAACACTAATGTGTCGGAGGAAGAAACTGTTTCCACTGCGAGTGATCAGAGGATGTCTGACGGAAACACTGTCACCCCGGAGCCCCGGGCGGCTGCAGGTGTCCGGCCGGAGGGAGAGCAGAGCCCAGCGGCCGAGGAGGGACCTGCCGGGCCGCCTGCCGACGCGCCCCCCGCTGCGCACACTCGTTCCCAGCAGACGCCGGAGGAAGAGGACAACCCGGGCCCCCCGGCCCCCGGACACAGCGCCGCTCAGATGGACCGGCCCCCGGAGCAGGGTGCGAGTCCGGCAGATGTCCATACAGTGGACAACGAGGTGGTAGACTCTGTCCTGACTGGAAAAATTACAGCAACAGTTAAAATCATCCTCCTCCCCGAGGGCCACGTGTGGACCATGGCGTTTGCGATCTCCACGTCAGCCGGGGGTCTGAGGGAGCACTTCGCCAGCGAACTCAAAATCCCAGCCAGCGTGATTCACATATCGTTTNN

Function

GO: NA

KEGG:

id description
K24838 IQUB; IQ and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006459 True 1488 mRNA 0.59 10 5127859 5134715
TU137492 False 555 TUCP 0.62 3 5127357 5128829

Neighbor

gene id symbol gene type direction distance location
AMCG00006461 NA coding upstream 36680 5079750 ~ 5090677 (+)
AMCG00006455 NA coding upstream 110671 5015646 ~ 5016686 (+)
AMCG00006452 NA coding upstream 159324 4961206 ~ 4968033 (+)
AMCG00006454 NA coding upstream 196448 4926843 ~ 4930909 (+)
AMCG00006453 NA coding upstream 200577 4921018 ~ 4926780 (+)
AMCG00006458 NA coding downstream 4827 5139542 ~ 5149792 (+)
AMCG00006468 NA coding downstream 21883 5156598 ~ 5181731 (+)
AMCG00006464 NA coding downstream 75313 5210028 ~ 5231466 (+)
AMCG00006467 NA coding downstream 109063 5243778 ~ 5301376 (+)
AMCG00006466 NA coding downstream 173782 5308497 ~ 5311416 (+)
G109786 NA non-coding upstream 82724 5044416 ~ 5044633 (+)
G109780 NA non-coding upstream 105179 5021296 ~ 5022178 (+)
G109779 NA non-coding upstream 106954 5018089 ~ 5020403 (+)
G109767 NA non-coding upstream 202563 4923132 ~ 4924794 (+)
G109721 NA non-coding upstream 606108 4518917 ~ 4521249 (+)
G109837 NA non-coding downstream 217741 5352456 ~ 5353170 (+)
G109933 NA non-coding downstream 411492 5546207 ~ 5546436 (+)
G109978 NA non-coding downstream 664885 5799600 ~ 5804559 (+)
G110024 NA non-coding downstream 849075 5983790 ~ 5984250 (+)
G110081 NA non-coding downstream 1083816 6218531 ~ 6220086 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 20335 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 28659 5080881 ~ 5098698 (+)
G109781 NA other upstream 101451 5024895 ~ 5025906 (+)
AMCG00006445 NA other upstream 599619 4524806 ~ 4527738 (+)
G109714 NA other upstream 649787 4476934 ~ 4477570 (+)
G110023 NA other downstream 844347 5979062 ~ 5982909 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 1385150 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 1777161 6911876 ~ 6912254 (+)
G110279 NA other downstream 2518957 7653672 ~ 7655194 (+)
G110445 NA other downstream 3041045 8175760 ~ 8176786 (+)

Expression


Co-expression Network