AMCG00006460 (wasl,wasla,LOC107698525)


Basic Information

Item Value
gene id AMCG00006460
gene name wasl,wasla,LOC107698525
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5094271 ~ 5107022 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006460
ATGTTCTGCACCACCTTCTCCGGGACTCCCTCCGAGGAGCTGACAGACAGCGGCTACCAGGTCAGCGGCTGCCTCGGGCCCCTGCACTGCCTCGTCCTGCCCGAAGACGAGCTCTATCTGCCCCTGTCCTCCGTGGCCCGAGGCGAGGGCTCTTGCCTCCTGATGGGGAAGTTCCTGTTAGATGTGAACGTGGGTGCTCTGGAGGACCGTAACATGAACTACTTTAGCCCTGCGTGCGCTGCGTTTCACCTTAAAAAACGGACAGGCAAAGCCAGAGGACCTGCATTGCCCATGGCCACAGTGGACATAAAGAATCCAGAAATCACGAACATGCGGTACTCGAACTCCCAACACGCTCCCAACAACATCCTGCACCCCAACCTCGTCAAGGACAAGAAGAAAGTCAAGGGGAAAAAGAAGAAGTTGACCAAGGCAGACATCGGGACCCCCAGCAACTTCCAgcACATTGGACACGTTGGCTGGGATCCAAACACAGGCTTTGATCTGAATAATTTAGACCCGGAGCTGAAGAACCTGTTTGATATGTGTGGGATCTCGGAGGCACAGctgaaagacaaagaaacatCCAAAGTGATCTACGACTTCATCGAGAAGAAGGGCGGGGTGGAGGCGGTAAAGAATGAGCTGCGCAGGCAAGccCCCCCACCGCCCCCGTCTCGAGGAGGccctcctcccccccctccccctcacagCTCGggccccccgcccccacctccAGCCAGAGGCAGAGgcgcccccccacctcctcctccctcccggGCCCCTACGGCCGCTCCGCCACCGCCCCCTCCCTCCAGACCCGGCATGGGAGCCCCTCCACCGCCGCCACCCCCGACCCGTGGCCACCTACCCCCACCACCGCCCCCCTCACACGCCTCCATGGCCCCCTCGGCGCCCCCGCCTCCGCCACCCCCTCCATCCGGTCTGGGTTCAGGCGGAcccccgcctcctcctccacctcccccgCCGCCCGGACCCCCGCCTCCCGGACCTCCACCGCCTCCAGCTCCCGCCCTGGACACGGACCTGCAGTCCCCACTGGGGGGTAAGTCAGCACTGCTGGACCAGATCCGGGAGGGGACCCAGCTGAAGAAGGTGGAGCAGAACAACCGGCCGGTGTCCAACGTGGGACGGGACGCCCTGCTGGACCAGATCCGACAGGGTATCCAACTGAAGACGGTAGCGGACGGCCCCGACTCGGCCCCTTCAACGCCAGGTCCCACTGCGGGCATCGTGGGGGCGCTGATGGAGATGaagacgacgacgacgacgaagAGGAGGATTTCGACGAGGACGATGAATGGGACGACTAGTCCTGCTCCTCCTCTGTGGACGGATCAAAACCCTGAATATGTTCGAGTCTCTCTACAAAAAacttattaaaatgataatgtaAATGTTCTATCGATTTtttgctgtatatttttgttgccttctgctttttttaattaatctgtgcAATACCTCATTTAATCTGTAAAGGTTTGTCCCGTTTCTTCTGTAAAGTTACTCCCTATTAACCGCGTGCAATCTGACGAACACTCGGGGCGAACACTTGACTGCTAGATctgaatgttattttctttcatcgCTGAGGGAGTTGAGGAAGGTGTCAAGTAAAACTgacgaggaaaaaaaaaaaaaaaaaaaaagtcctccATGTTGTAATTGTTAGCAAATGCAAGATAACACTATTTTCATACCCAACTTTTCTGTACCTTaaattttcttattaaaatccTAGTATAgcactattttttttctttataaagatTCAGCTCTTAGACTTCTTAGCCCCGTCATTTCCAATGTAAAGATAAACGGACGCTGAGGTAGATCTATTTTTGCACGATCGAGAAGAGAAAAGTCACTACGAAAGGGTACAGATCCTGTATTCAGCAATATGCTTTAATGGCTCCGAGAATTCACTACAGGCGTACGTCAACGTCGTTAATGTCTGTCACAGTGTAGCAGCACTCTCTCATCAAGGGAGGAAGTCATGTTttcgttttgttgttttttatcgTTGGCACCTTGTATACCTGGTTTATGTTTAGGAAATCCAtacagaatttatttttcttctctttgttttgtctCTCCTTTTGTACTGTAGCAATCATAAGATTATGTTGGTGGGAATCAGGTCAGTgttcatttaaagaaagaaaggaaaaaaaaagactaacgccatctgtttatttaaaatcctgCAACTTACTGTTACACATCGTCGGTTCATATATTAAAGGCTGCAAGGGACGAATCCTCTCTCATTTAGGATTTTTTCCGAGGGGCTGTTGCTTGACACTTgcaaggtaaaataaataaataaaatgcctgtAAAGACTCTTGAACCTTTGTGTAGTAATGATCGCTGTTTCTAACAGTATTGTTGTACATGGTTGACTTCTACAatctttcattttctcctgGGGTTTGTGATGCATTAGAGACCGCAATATCGACGTCAAACCCTCCAAATAGGTTGGAAAAGGAATGGAATGATACTAAATTgtatactgaaataaatgttaatatttacgGATCATCTGGTGTGTGCTTTGATTCTTGGGTGTTTTGCATTCTACCAAAAGTTTGAAATGTGTATCGACTCTATTTTCA
>TU137473
CCCGGACCCCCGCCTCCCGGACCTCCACCGCCTCCAGCTCCCGCCCTGGACACGGACCTGCAGTCCCCACTGGGGGGTAAGTCAGCACTGCTGGACCAGATCCGGGAGGGGACCCAGCTGAAGAAGGTGGAGCAGAACAACCGGCCGGTGTCCAACGTGGGACGGGACGCCCTGCTGGACCAGATCCGACAGGGTATCCAACTGAAGACGGTAGCGGACGGCCCCGACTCGGCCCCTTCAACGCCAGGTCCCACTGCGGGCATCGTGGGGGCGCTGATGGAGGTCATGCAGAAGAGGAGTAAAGCCATCCACTCCTCTGATGaagacgacgacgacgacgaagAGGAGGATTTCGACGAGGACGATGAATGGGACGACTAGTCCTGCTCCTCCTCTGTGGACGGATCAAAACCCTGAATATGTTCGAGTCTCTCTACAAAAAacttattaaaatgataatgtaAATGTTCTATCGATTTtttgctgtatatttttgttgccttctgctttttttaattaatctgtgcAATACCTCATTTAATCTGTAAAGGTTTGTCCCGTTTCTTCTGTAAAGTTACTCCCTATTAACCGCGTGCAATCTGACGAACACTCGGGGCGAACACTTGACTGCTAGATctgaatgttattttctttcatcgCTGAGGGAGTTGAGGAAGGTGTCAAGTAAAACTgacgaggaaaaaaaaaaaaaaaaaaaaagtcctccATGTTGTAATTGTTAGCAAATGCAAGATAACACTATTTTCATACCCAACTTTTCTGTACCTTaaattttcttattaaaatccTAGTATAgcactattttttttctttataaagatTCAGCTCTTAGACTTCTTAGCCCCGTCATTTCCAATGTAAAGATAAACGGACGCTGAGGTAGATCTATTTTTGCACGATCGAGAAGAGAAAAGTCACTACGAAAGGGTACAGATCCTGTATTCAGCAATATGCTTTAATGGCTCCGAGAATTCACTACAGGCGTACGTCAACGTCGTTAATGTCTGTCACAGTGTAGCAGCACTCTCTCATCAAGGGAGGAAGTCATGTTttcgttttgttgttttttatcgTTGGCACCTTGTATACCTGGTTTATGTTTAGGAAATCCAtacagaatttatttttcttctctttgttttgtctCTCCTTTTGTACTGTAGCAATCATAAGATTATGTTGGTGGGAATCAGGTCAGTgttcatttaaagaaagaaaggaaaaaaaaagactaacgccatctgtttatttaaaatcctgCAACTTACTGTTACACATCGTCGGTTCATATATTAAAGGCTGCAAGGGACGAATCCTCTCTCATTTAGGATTTTTTCCGAGGGGCTGTTGCTTGACACTTgcaaggtaaaataaataaataaaatgcctgtAAAGACTCTTGAACCTTTGTGTAGTAATGATCGCTGTTTCTAACAGTATTGTTGTACATGGTTGACTTCTACAatctttcattttctcctgGGGTTTGTGATGCATTAGAGACCGCAATATCGACGTCAAACCCTCCAAATAGGTTGGAAAAGGAATGGAATGATACTAAATTgtatactgaaataaatgttaatatttacgGATCA

Function

symbol description
wasla Predicted to enable actin binding activity. Acts upstream of or within macrophage differentiation and thrombocyte differentiation. Predicted to be located in nucleus. Predicted to be active in actin filament. Is expressed in caudal fin. Orthologous to human WASL (WASP like actin nucleation promoting factor).
wasl Predicted to enable identical protein binding activity. Involved in several processes, including actin filament polymerization; negative regulation of lymphocyte migration; and negative regulation of membrane tubulation. Located in cytosol and nucleus.

NR:

description
PREDICTED: neural Wiskott-Aldrich syndrome protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006460 True 2646 mRNA 0.50 7 5094271 5107022
TU137473 False 1619 lncRNA 0.43 3 5098996 5106948

Neighbor

gene id symbol gene type direction distance location
AMCG00006461 NA coding upstream 3594 5079750 ~ 5090677 (+)
AMCG00006455 NA coding upstream 77585 5015646 ~ 5016686 (+)
AMCG00006452 NA coding upstream 126238 4961206 ~ 4968033 (+)
AMCG00006454 NA coding upstream 163362 4926843 ~ 4930909 (+)
AMCG00006453 NA coding upstream 167491 4921018 ~ 4926780 (+)
AMCG00006458 NA coding downstream 32520 5139542 ~ 5149792 (+)
AMCG00006468 NA coding downstream 49576 5156598 ~ 5181731 (+)
AMCG00006464 NA coding downstream 103006 5210028 ~ 5231466 (+)
AMCG00006467 NA coding downstream 136756 5243778 ~ 5301376 (+)
AMCG00006466 NA coding downstream 201475 5308497 ~ 5311416 (+)
G109786 NA non-coding upstream 49638 5044416 ~ 5044633 (+)
G109780 NA non-coding upstream 72093 5021296 ~ 5022178 (+)
G109779 NA non-coding upstream 73868 5018089 ~ 5020403 (+)
G109767 NA non-coding upstream 169477 4923132 ~ 4924794 (+)
G109721 NA non-coding upstream 573022 4518917 ~ 4521249 (+)
G109837 NA non-coding downstream 245434 5352456 ~ 5353170 (+)
G109933 NA non-coding downstream 439185 5546207 ~ 5546436 (+)
G109978 NA non-coding downstream 692578 5799600 ~ 5804559 (+)
G110024 NA non-coding downstream 876768 5983790 ~ 5984250 (+)
G110081 NA non-coding downstream 1111509 6218531 ~ 6220086 (+)
G109781 NA other upstream 68365 5024895 ~ 5025906 (+)
AMCG00006445 NA other upstream 566533 4524806 ~ 4527738 (+)
G109714 NA other upstream 616701 4476934 ~ 4477570 (+)
AMCG00006413 NA other upstream 926319 4159523 ~ 4167952 (+)
G109570 NA other upstream 938522 4152816 ~ 4155749 (+)
AMCG00006459 NA other downstream 20335 5127357 ~ 5134715 (+)
G110023 NA other downstream 872040 5979062 ~ 5982909 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 1412843 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 1804854 6911876 ~ 6912254 (+)
G110279 NA other downstream 2546650 7653672 ~ 7655194 (+)

Expression


Co-expression Network