AMCG00006479


Basic Information

Item Value
gene id AMCG00006479
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5763354 ~ 5769646 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006479
ATGTTAGctttttctctgtcttcctcCAGGTACTATAGCGCCACTATTCTCCAGATGTCAGGAGTAAAAGATGATAAATTGGCAATCTGGCTGGCGGCAGTTACGGCTTTGACAAATTTCATTTTCACTCTGCTGGGTGTGTGGCTGGTGGAGAAAGTAGGCCGTCGGAAGCTGACCCTGTGGAGTATGGCTGGTACCAGCCTGAGTCTCATGGTCCTGGCCACCGGGTTCCTGCTCTCTGCGCAGCATTCACCCCGCATCACTCTCCACCCAGAAGTCCCAGAGGCTCCAAACAGCACCTGCTCCACATATGGGTTCTGTGACGGGTGCATGTTAGACCCAGGCTGTGGGTTCTGCTACCAGGAGAACAGCTCCTCCGTCTTCGCCTCTTCCTGCATTGCTGTCAACAAAACCTCCACCGAAGAAGCGGCCTGGGGCAGGTGTTCGAATGCGACGGCGATGAAAGAGGGCACGTTTTGGGCCTACAATTACTGCCCCACTGACTATTCCTGGATGGCCCTTCTAGGCCTCATTTTGTACCTGATGTTCTTCGCACCTGGAATGGGACCCATGCCTTGGACGGTCAATTCGGAGATATACCCGCTGTGGGCCCGGAGCACGGGGAACGCCTGCTCCGCGGGGGTGAACTGGATGTTCAATGTGCTGGTGTCGCTGACCTTCCTGCACGTGGCTCAGCACCTCACCTACTATGGTGCGTTCTTCCTCTATTCAGGCCTGGCAGCTGTGGGCTTCTTCTTCATCTACGGCTGCCTTCCAGAGACGAAAGGAAGGAGGCTGGAGGAAATTGAATCATTGTTCGAAAACCAGTTATGTACATGTGGAGCTTCGGATTCTGATGAAGGGAGACACATTGAATATATTAGGGTAAAAGGAAGTAATTACCATCTTTCTGACAACGATGCCTCTGATGTAGAATAA

Function

GO: NA

KEGG:

id description
K08150 SLC2A13, ITR; MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006479 True 939 mRNA 0.53 6 5763354 5769646

Neighbor

gene id symbol gene type direction distance location
AMCG00006480 slc2a13,LOC106609118,LOC106575984,LOC103369283 coding upstream 39311 5699617 ~ 5724043 (+)
AMCG00006478 NA coding upstream 166647 5593752 ~ 5596707 (+)
AMCG00006475 NA coding upstream 272185 5490882 ~ 5491169 (+)
AMCG00006469 dld,LOC106561021 coding upstream 329718 5427730 ~ 5433636 (+)
AMCG00006465 NA coding upstream 417362 5322363 ~ 5345992 (+)
AMCG00006484 abcd2,LOC107566844,LOC107689723,LOC107689245,LOC105891163,LOC106609116,LOC106575983 coding downstream 14091 5783737 ~ 5798307 (+)
AMCG00006485 NA coding downstream 39298 5808944 ~ 5854451 (+)
AMCG00006483 cpne8,LOC108427072,LOC108279828,LOC101074159,LOC102297242 coding downstream 149284 5918930 ~ 5958050 (+)
AMCG00006487 NA coding downstream 214827 5984473 ~ 5985996 (+)
AMCG00006488 NA coding downstream 219843 5989489 ~ 5996070 (+)
G109933 NA non-coding upstream 216918 5546207 ~ 5546436 (+)
G109837 NA non-coding upstream 410184 5352456 ~ 5353170 (+)
G109786 NA non-coding upstream 718721 5044416 ~ 5044633 (+)
G109780 NA non-coding upstream 741176 5021296 ~ 5022178 (+)
G109779 NA non-coding upstream 742951 5018089 ~ 5020403 (+)
G109978 NA non-coding downstream 29954 5799600 ~ 5804559 (+)
G110024 NA non-coding downstream 214144 5983790 ~ 5984250 (+)
G110081 NA non-coding downstream 448885 6218531 ~ 6220086 (+)
G110147 NA non-coding downstream 1026103 6795749 ~ 6795994 (+)
G110161 NA non-coding downstream 1086234 6855880 ~ 6857998 (+)
AMCG00006459 NA other upstream 628639 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 656332 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 664656 5080881 ~ 5098698 (+)
G109781 NA other upstream 737448 5024895 ~ 5025906 (+)
AMCG00006445 NA other upstream 1235616 4524806 ~ 4527738 (+)
G110023 NA other downstream 209416 5979062 ~ 5982909 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 750219 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 1142230 6911876 ~ 6912254 (+)
G110279 NA other downstream 1884026 7653672 ~ 7655194 (+)
G110445 NA other downstream 2406114 8175760 ~ 8176786 (+)

Expression


Co-expression Network