AMCG00006482


Basic Information

Item Value
gene id AMCG00006482
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5664975 ~ 5697656 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006482
aaaagcTAATAACAACACAATCGGAGTACAGGAGCAGTGTAGTGTTTGCTTCAGGTTTAATCAGATGTTAtttgaaaaaagtttaaattaggCTGTGTATTATGAAGGAAGTGACAATATGAAAGTGATCAGAGGAGCAGCAGCTACTTGAGCAATTGAAAAAAACGGACTAATTAACCTGCGCAGTCATGTGATCACCCCACCACGGGACGCAGTGGATTGATTTCGCCGCttctttaaatgtaacaatatcAATATAGGTAACAATAGCGCTATAAACTTACATGTCCGGAGAAGGAAAGTCCCTGAAACCGAAAGTGCCTTTTGCAAGAGAACTTCCTCCAATTAATGACACAAAACGGAATACGTCCAGGTGTTACATTATTTCCCCATTTGCCTGCGATGAACATACAGAAGTTAAGTTTGTCCGACACTGTGCGAGGGGATTTCAGAGCTCCGCGCAATGCCGCTTCATGCCAGCACAGTGATTGCttgtgtattacatttgtaGCATTGCTTTGTTGCTCGATGTTTTGTCGTTAGTATAGTTTTAAACCTATTTTCTTTGAGTTTGCTGAAATCATTGATGGGGCATGGCTGATAAGGAAGAACTGGAGAAAAggctaaacaaattaattgtgagattaaaacatgtagAGACTGGCAAACAGCTGGACACCGTCGTGCAAATCCTGGAGGATCTTCTCTCCCTGGCAAACGCGGATAATTACGCCGCAGAATTGTTTGAAGGCAAAGACGTCCATCTGTCATTAATGGTGGTCTTGGATGTCTACCTTGGATGCAGTGCTCTACAGCAGGTGGGATGGTCCTTACTTTGCAGActgctggaattgtgtcctgcGACTCTGGAGATGTTAGTTTCTCCACATGTTGAAAATGACTGGATTGCACTGGGAATACACCAGCAGATTCTGAAAATGCTGTCTTTACACAATGGAGACGATAATAAAGATGACAAGGTGATGATGGTTGGACTCAGGGCTTTATCGTATCTTCTAGAGTCAGatgCAATTTTGTTGATGATCTTGGATGAAAAAAatgatgttttctgtttgattgttgATGCAATGTCAGACTTTGCTTCAGATGAAGAAATCCAGATATACGGGTGTAAATCTTTGCAACTGCTTCTTGAAAAAGTTCCAGATGTGCACTTAATTGAATTTGTGGAAGGCAATGATCACAAGGCAATTCTGAGGGCAGCAAGGCAGTTTCAAGACAACCAGCACACTGTTCTGCAAGCACTGAGGGCCCTGCTGCCTTTGGCTGCCCCGGCCAGCAATGTCGAGGTTCTCATGTCAGGAAATGAAAGATGTTATGAACTGATAATGCGAGCGATGCAGTCCTTTCCGAATAATGAAAAACTGCAAGAAGTCGGCTGCTGCCTGTTTCAGAAATTTACATCGGAGAGTTATTACACCATTCTTGTATTAAATGGAGTGCCTAAAGTCATCGTGAAAGCTGCAGTGATGTATCCCGAAAACACCAGCCTGCAAACTTCGGCACTCTCCGTCTTGGCCATCCTCACGGAAACCATAGTTTTGAACAGGGATCTGGATGAGTGGACAGAGGAGGATGATGTTCGCTGGATAGACACGTGCTGCCGAGCTTTAGAGCTACACAGACGCAGCGCCGAGGTCCAGgaaGCAGCCTGCTGGGCACTGAATAACCTCCTCGTATATGACAGCCAACTTCATGAAATGTTCGGTGAAGAAGAAGGGAGATACCCAGTGCACAGACAGGTCATGGCTGCGATGCTTTTGCATTCTTCCTCTCTGGGGGTGTTCCAAGCCACTGCCAACATGTTGGCAACATTGGTAGATCGCAAAGGTAAAGTGAGATCGCTGTTAATGTTGAATGGGATACACATTAATATCCTGCAGATGATGAAGAAACACTCGGTCTCTCCCGATGTGGCTGAAAGTGCCTGTAAACTGCTTTACAAACTGTTCCAGGGAAGGATGCCAGATCTTGATGTGGGGACCACGGCGATGGGTGAGATATTAAGCGCCATGAAAACCCATCACTGCGTGCTTTCCATTCAGCTGGAGGCACTGCGAGCCAGCATGGTGTTAATTAACCCGGACAGGAGATTGACCGAGCACGGGACCTCAATCGGTGACCCCGACACCGTGGATGTCACCCTGAAGGTCCTTAAAAACCAGTGTGTGTTGGAGGGGGCTCACACTGTGTTCCTCAATGCGTTGAACAAGTTCATCTGGAATTTGGCCGTTCAGGAATGTGGCTTCAAAGTCCTCTCTGCGCTCTCAGACTGCTCCGGTGCATTGGATCTAATGTATCGGCAGGGGGCCATAGACACCGtgctacacacactgcagatgTACCCCGAAGAAAAAGAAATCCACTTCTGGGGCCTAGATCTGCTGCAGAGTCTTCTTTCTAAAGACAGGTTGTCCTTAGCTACAGTCCCCATTATGGCCTCGGTTCTTGTCAGGTCTTTACAGCGATACAAAGAGGATTTAGAGATACAGTTAAAGGGACTCAAGGCTGCTTGGAAACTGCTTGATTTATCTCCAATTGCAGCTGAAGAGCTGGAGAAACAATCACTTGACAGAGTTATTTCCCAACTGATGAACATGTCTACTGAAAGGAATGCTTCAGTGCAGAAGATGTGTTGCTTGTGTTTCTCAAAAATGGCCCACAATGTTGATCTTAAATACAGCATGCTTGAGAAGGCCTGTGCTGAATATGATGTAGTCATGGCCGAGTGCCTCATTCACCTGGGGGCTGATGTCAATAAGAAAACCAAGAAGGAATCTCTGATCTACCAGGTATGTGAACAGAAAACTGACCCGGAGCTGCTGGAGTTACTGTTATACAGTGCGACTCACGAGCAGCAAATGCGAAAAGCCCTAAGCGTCGCTATTAGGAAGCGGGACGGCCCTGTCATTAGTTTGTTGCTGAGGAAACTGGGACTGGATCTGACAAACAACGCCATCTGCCTGGGAGGATTTCGACTTGGGCACATCGAGGACTCCTGGTTAATACCGCTGTTTTCCGAGCGCAGAATGaatatttttctgaaaagtACCAGCAAAGGCTCCTCATTGGCCAGAGAGATCCTGAAATATCAGAAAAGACAGGCTGCTTTAGAGTCACAGAAATCCCTCTCTGATGCTTCATATCTGGGAGCCACTCTGGATGAACAGGAAGATGGTGGCTTTGTATCTCCTGATGAAAGTGGCATTTTTATGAATGACGACATGGACAGCGATGATGATGAAGAGATGCTGCAGAAGAAGAGGATATCCCAGTCTAGCTATTCGGGGGACTTGTCTGGAAGTTTTTTAATGCTGCCGAAAGTAAGACAACGGCATCCCAGCTCTGAGGGAGGAAGTGGCGATTCTGAGCCAAATGAGGGACCGCATCAGAGGCTGGTCAGGACAACATCCAGAAAGAAGGGTAGTTTTTCTTTGAGTCTAACATCAGTGGATAGTTCGTCCTCGCTGATCTTAGACAAGGACTGCATTAAGTTACTTGACCTCTCTGGGAATGAACTGGACAGTCTAAATTTTCTGACTGCAAACAGCACCTTGACTCCATTCCTGGAGCATATTGTGAGACTGGAGCTGAATCAAAACAACCTGTCAGAATTTGCAGCAAGTCTGTGTGAAACCCTAAAGAGTGTGACTCATCTGGATCTCCACAGCAATAAGTTCCAGTCCCTTCCAGATGGCATCCTGGGAATGCCCTGTCTTAGTCTCCTCAACATCTCCCAGAATGCCATTGGCCCATGTCTGGTTCTGAATCCTAATGCCCGCTGCCCGACTCTGAGACAGTTTATTCTGTCCAGTAATCAGCTATCATCTTTTCCCGATCAGCTGGGGCTGGCTGTGGATAAATTGGAGGAACTCCACCTGGACGGGAATAAAATCTCTGAAATTGACTCTCCACTCGCCTTGTCTGAGTTGAGGCACCTGGACATCAGCAAGAACAGCATTGTGAAAATCGTGGATGTATTTCTGGCTGACTGCCTCAAGTTAGAGTCTTTCAATGCTTCAGTGAACCAGCTGAGTCTTTTACCCGATCTTCcagcaaaaataacaacattaaagCTCTCTCACAATGAATTCACCTGCATTCCAGACGCTATTCTTCATCTTCCATATCTGCGATCCATTGACATGAGGAACAATCACCTCACGGTCCTGCCTGGGCCCTCGAACTGGGAGTCCACTAACTTAAGAGAGCTCATATTCAGCAACAACCTCATCAATGTGCTGAACCTGACTGGACCCATCTACAAATGGGCCAGACTGGAAAAACTGCATCTGTGCAATAATAAACTGGAGGAGATACCTCCTCAGATCGGGCTGCTTGAAGACCTGACCTCACTAGATATCAGCAAAAACAGCGGCCTGAGGAGCTTCCCAAATGAAATGGGGAAACTGGAGCGCTTGTGGGACCTGCCTCTGGACGGTCTTCAGCTGGACCTGGATCTGAAGCACATCGGCAGCAAGACAAAGGACATCATCAGATTTCTCCAGCAACGGCTGAAGAAAGCTGCCCCCTACTATCGCATGAAACTGATGGTAGTGGGGAATTCTGGGAGCGGTAAAACTTCACTCGCCAACCAGCTCATGAAACTGAAGCGCTCGCAGTGTCACCCTGATCCGACTCCCCTCGGGATTGACGTCAAGGACTGGACCCTCcgtgaaaaagggaaaaagaacattgttttaaatgtctggGACTTTTCAGGGAGGGAGGAGTTCTGTGGTTCACACCCTCACTTCATGACTCCAAGGGCCTTGTATCTGGTGGTTTATGACCTGAGCAAAGGACCAACAGAAATTGATGCTATTAAACCCTGGCTGTTCAACATCAAGgcccAGGCGTCTTCGTCCCCTGTGATTCTGGTGGGCACCCACACAGACGTCAGTGAGGACAGGCATGTTCAGGCCTGCATAGCTAAAATCAGGAATGAGCTGCTGAACCACCAGGGCTTCCCCATCATCAGGGATTACCACATGCTCACGGCCACCGAAGACTCGGACGACATGGGCCGCCTGCGCAAAGCCATTGTTAAAGAGGTCATGAGCTTTAAGATTCAAGACCAGCCAGTCATGGGTCAGCTGATCCCTGACAGCTACCTGGAGCTGGAGAAGAGGGTGCTGCAGGTGCGCGAGTGGGTGCCCGTCGAGTTCCCAGTCATTCAGCACCAGAGTTTACTGGAGATCATTCAGGAGAACCAGCTCCATCTGGATGAAAGCGAGCTTCCCCATGCCATCCACTTCCTCAGCGAGTCTGGTGTTCTCCTACACTTCGATGATCCTGCCCTTCAGCTGAGGGACCTGTATTTTGTTGACCCTCAATGGCTTTGCAACATAATCTCCCAGATACTGACGTTGAATGGAGGAGGTTCATCAAAAACTCCTAAAGGTATTGTTCAGCGTTCAGTGGTGGAAACATTTCTTCTCAAAAAACAGAGCTTCCCCAAAAATTACATCACTCAGTACTTCAAGCTCCTGGAGAAGTTTCAGATCGCATTGCCTTTCGGAGAAGACCAGCTTCTTATTCCCAGCAGTTTGTCCGATCATCGGCCAGTGATCGAACTCCCCCACTGTGAAAATTCAGAGATTATAGTGAGGCTTTATGAAATGCCTTACTTCCCCATGGGCCTGTGGTCCAGGCTGATCAATCGTCTTCTCGAAGTATCAATGTATATGCTTTCCGGAAGAGAGAGAGCTCTGCGTCCTAATAGGATGTATTGGAGGAAAGGCATCTACCTCAACTGGTCCCCAGAGGCCTACTGCTTAGTGGAATCGGCCACCCTGGACACACCGGAGAGTTTTGTCAGAATCACGGTGCCGTGCTCCCACAAAGGCCGTGTTTTGTTGGGCCAGGTGGTGGATCACATAGACTCCCTGTTGGATGAGTGGTTCCCGGGCCTCCTTACAACCGACGTCCACGGCAAGGATTGTCTTTTAGTTAGCACTGTGGATCCACGGATGACAATCCCGATTTCCCAGATCGCTCCAGACCTGCTTCTGGCCGATCTGCCTGCAAACCTCATGCTGGACATCGACCAGTTAGAGATGGACCTTTCGTCTGAATATTTACTGGGGGACGGTGGATTTGGATCGGTCTATCGTGCAGTGTATAAGAATGAAGAAGTCGCAGTCAAGATATTTAACAAGCACTCATCAGAACTGCATCTGCACCGGCTGCTGAGACAGGAGCTGGCCGTGCTGTGTCACCTCCACCACCCCAGCCTCATCTCGCTGCTGGCAGCCGGGACTCAGCCGCGGATGATGGTCATGGAGCTGGCACCCAGGGGCTCCCTCGACTCTCTCTTTGAGCAGAAGAAAAATGGCTGCCTCAACAGGACCCTGCAGCACCGGATAGCGCTGCACGTGGCAGATGGCCTGAGATACCTTCATTCCTCCATGATCATTTACCGGGACTTGAAGCCTCACAATGTCCTCCTCTTTAATCTGAAGACCGACTCTGAGATCATCGCCAAAATTGCGGACTATGGCATCGCCCAGTACTGCTGCAGCATGGGAGTCAAGACTTCTGAGGGAACACCTGGGTTTCGTGCACCGGAAGTTGCCCGTGGAAATGTCATCTATAATCAGCAAGCAGATATCTTTTCCTTTGGCCTGTTGCTGTATGACCTTCTCACTAGCGGAGAACGTATCTTGGACGGGATGAAGTTTCCCAGTGAATTTGACGAGATAGCCGTGCAAGGGAAATTGCCAGATCCAGTAAAACACTACAAATGTGAGCCATGGCCCGGGTTTGAGAGGCTGATGAAAGATTGCATGAAGGAGAATCCCGAGGACCGACCCACTTCTTCACAGGTTTTTGACAGGCTGAACTCGGGGGAGCTACTCTGTCTGATGAGAGACATCTCGGTGGCTGAGGTTGTTGGTGCTGATTGCTTTGCGCTCTCCAGTCCGAGCTGTCAGCCCAAGGTCTGGGTTGGCAGTGGAAGCAGCAGCAAGAAAAAAGGCCGTATTACATGTATGGACTTAGAGACGGGGAAACATTCCACTCAGGAGGTTGACAGCAGCCCAGTGTTGTGTGTTACGATGGTGCGTCTCCCAGGAGAACAGGACGAGTGGATAGTGGCTGGAACACAGTCTGGGAGGCTGATCGTCATTAGCATGGATGATACGGCATCTAAACACCGGCTACAAGACGTGACCGACTCAGTCACCTCATTGTTCTTCCACTCTTACCCCAAACACAGcaAAGAGCAGAATTTCCTCTTAGTGGGCACTGCAGATGGTACCCTTGCAGTTTATGAGGACACCGTAATCAAGTGTGAAAATGGAAAGCCTTACAAGATTGTGCAGATTGGCAACATTAACACGCCCCTAGTGTGCCTGAGTGAGTCGACCTACTCCCAAGACAAGAGCACCATTTGGGCTGGCTGTGGGGCCAACGTTGTGTCGCTCACCTGTGATTATGACATCTGGAAGACCATAGACACCAAACCAAATTACCAGCTTCAGCAGAGATCTTGCAGTGAAGCAAACATAATACGAATGGCGGTTGATAAGTACATCTACTTAAACAAGAAGGACAGTCATGTGGTTGAAGTTTGGGACAAAAAGACTGAAAAGCTGAATGAATTTCTGGACTGTTCTCTCTTCTTGAAGCATGGATCTAATAAAAGAAGCAAGAGACCGTCTGCCGAGGACTTGCGTGCTGTGAGAGTGAAAGCGCTGCTCCTGCATCACAGTGGCACGCTATGGATTGGAACGACGGGAGGTCATGTGATCCTTGTTGACTTGTCCACTCGGCAGCCCATCCGAGTCATTGGCGTACGTGCATCTATTAGGAGCATGGCAGCAGTAAAACTGGAGAGTGAGTCTGTCTTGTACGTCTGGAACAGTCACCTTCCTCTCGAAGTGCAGAACTTGCAGAAACACTGTGAGATGAGACAGGAAATTGGAGAGAAAATGAGAATGTCCCCCTTTGATTGAAATCACAGaTCTGTATTGGAAGAAAGTCTATGAAGATGGAATTAACAGTTTTGTACATGAAGGGAAACTGCACCGTACACATGTTCAAGGCAGAAGTGTAGTTTTAGTAAGACAGTGGTGTCATTTGAAGCTATTTGTGTTGTATCAGGTTTTGttgttataaagaaaaaaaaatacccttaAATCAGACATTTGAATCTCAGTTACTAAAACACTGCATAAACAAATAGCTGTGTACTTCTGGGTGTACTTCAGAGTGTTGGCCTGTTTTCTTACGGACTTTCCTTCACCTCTCTCTGATATTGagctctcctctctgctcccAGGCCACGAGCCCCCCACATACGTCCCAAACCTCCCCCCACTCACCTGTCCTCTCCTTCATCCCATCCCTCCTTAACACCGCACTCCTCTCCAGGGGTGCCACCAAGGGTGGGCCTGGGGTGGCCCCCCTACAAACACTGTCAGGGCCCCCCCTGCTAGCATTAACGAAACAACATCTCCTCCCCCCGCTAGCGTGACTGAAACAGCCCGACCCCCCCAGCAGTAATGGTCTACAACCGCTGCTACTCCTCTCGGACCGTGTCCCCTCAACATTCGCGCTCTCCATTTCTACCTCGCCACTCGCTCCCGGGCCCTCTGCAGTCCTGCATTTGCACAGCTGCACCGTTCTCTGCTCTGCTTACACTCTTTTTATGGTCACTTCTCCTCCATGCCTACTCCACCCTTTAACAAATACCAGGGAAAGAACTCTTATTATATTTGCACTTGTTAACTAATTTTACCAGGATTTATGCtgattgtattttgaaattattgtatttactggactttataatgctttgaaaattaTCCTTGTGAAATGTTTGTCGCTGtgatttttactggagcaatctagctGCAGTACCTTGCTctagggtacaacagcagtgctgGGACTGAAGCCACAATCTTCCACTCCACTTCCACTTCCCTCACACCACATGACTGCCCCTATATTatgctattatatatatataaat

Function

GO: NA

KEGG:

id description
K08844 LRRK2; leucine-rich repeat kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006482 True 9001 mRNA 0.48 51 5664975 5697656

Neighbor

gene id symbol gene type direction distance location
AMCG00006477 NA coding downstream 7854 5653275 ~ 5657121 (-)
AMCG00006472 NA coding downstream 113118 5550817 ~ 5551857 (-)
AMCG00006474 NA coding downstream 130928 5518671 ~ 5534047 (-)
AMCG00006473 NA coding downstream 151645 5510589 ~ 5513330 (-)
AMCG00006471 NA coding downstream 181174 5436543 ~ 5483801 (-)
AMCG00006481 NA coding upstream 74589 5772245 ~ 5783145 (-)
AMCG00006486 NA coding upstream 281471 5979127 ~ 5984291 (-)
AMCG00006492 NA coding upstream 288994 5986650 ~ 5991143 (-)
AMCG00006490 NA coding upstream 297158 5994814 ~ 6001150 (-)
AMCG00006493 celsr1,LOC108427079 coding upstream 353671 6051327 ~ 6067994 (-)
G109916 NA non-coding downstream 229211 5434937 ~ 5435764 (-)
G109878 NA non-coding downstream 255404 5409340 ~ 5409571 (-)
G109875 NA non-coding downstream 317748 5345683 ~ 5347227 (-)
G109815 NA non-coding downstream 528231 5136518 ~ 5136744 (-)
G109782 NA non-coding downstream 644300 5020037 ~ 5020675 (-)
G109995 NA non-coding upstream 104916 5802572 ~ 5803261 (-)
G109996 NA non-coding upstream 105842 5803498 ~ 5804452 (-)
G110015 NA non-coding upstream 156158 5853814 ~ 5855502 (-)
G110152 NA non-coding upstream 1122582 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 1214220 6911876 ~ 6912252 (-)
AMCG00006476 NA other downstream 61242 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 1387820 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 1487923 4168050 ~ 4177052 (-)
G109633 NA other downstream 1499375 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 1506852 4152816 ~ 4158123 (-)
AMCG00006491 NA other upstream 316448 6014104 ~ 6042924 (-)
G110140 NA other upstream 1087657 6785313 ~ 6785851 (-)
G110195 NA other upstream 1380733 7078389 ~ 7107138 (-)
G110507 NA other upstream 3024732 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 3086249 8783905 ~ 8794062 (-)

Expression


Co-expression Network