AMCG00006486


Basic Information

Item Value
gene id AMCG00006486
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5979127 ~ 5984291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006486
TAGGAACGGTGGTTTCGCACTCGTGTTGCAGGGGAACATATTAAGAGCGCACACAGGATGCAGGTCAGTTCATGCACATCTGTTATTCCTGCGACATGTCAGTCTGTGTATagttgcaatgcaatgcaataagGTTTAGTTCAGGAAAAATAAGTTTTAGCACGTACAACCATGGAGAGGTTTGAGGGCTATGTTTTCTCCGCGGTCTGCAGCACGTATTTCCTGGTTTCTTGCATCCTGTTCTCACACATCACCCGGGAGCAGAGGGAGCCCTACATGGACGAGATATTTCACATCCCGCAGGCGCAGAGATACTGCCAGGGGAGGTTCAGCGAGtgGGATCCGATGATCACAACATTGCCCGGGTTGTACCTGGTGTCCGTGGGCATCATCAAGCCCTTGGTGTGGCTGGCTGGCTGGACCGGGAAGTCCAGCTCTGCCTCTCGTAGAGTGCTCTCGGCCCTGGCTCTCTCCTCCTTCCCGGTGCTGTACTTCTTCACATTCCTCTACTACACGGACGCCGGCTCCACCTTCTTCACTCTCTTCGCCTACCTGATGTGTCTCTACGGCAGCCACAAAGCCTCCGCGCTGCTGGGCGTCTGCGCCGTCATGTTCCGCCAGACCAACGTCATCTGGGTGGCCTTCTGCGCCGGCACGGTCATCGCCCAGAAGATGGACGAGAGCTGGAGAGCCGAGCAGACGAAGAAGAAGGATGACGGGTCTTCCGCGCCTCATCTGGGCTCCGTGGCCGGGATGACCAAGCTGGCGCGATTCCTGGTGGAATACTTATTGAGCCCCCAGCATGTCAAGGCGGTTGTATCTTCCATGTGGCCTTACATCACGGTGGTGCTCGGCTTTGTTGTGTTCGTGCTGCTGAACGGCGGGATAGTGGTGGGAGACCGGAGCAGCCACGAAGGCTGTTTGAACTTCCCACAGCTGTTTTACTTTCTCTCCTTCACGTTGGTGTTCTccattttccattcattttcctaCCAGAAGACGGTGAACTTCCTGCGTTGGCTGAGAAAGAACCCTGTGTTCTGCCTGTGTCTGACTGCTCTGGCCCTCTTCCTGGTTTGGAGGTTTTCCTTCGTGCACAAGTATCTGCTGGCAGACAACAGACACTATCCTTTCTACGTGTGGAAGAAGATCTTCCAGAAACACAGACTGGTGCCCTATTTGTTGGTGCCGGGCTACGTGTTCACAGCGTGGAGTTTCACAGACACGCTGAAGTCTAAATCGGTGTTCTGGAACCTGATGTTCTGCGTGTGTCTCGCGGCCGCCACCGTCCCTCAGAAGCTGCTGGAGTTTCGATATTTCATCCTGCCCTATTTGATTTACAGACTCAATATTCCCGTACCTTCTGCCGGCCGGCTTCTCCTGGAGTTGGGTTTGTACACGGCTGTGAACGCGGTGACTATTTACCTCTTTTTAAATAAGACTTTCCACTGGCCTGACAGCAGTGACGTGCAGAGATTCATGTGGTgaacatgattaaataaatggacgctcttatttttgtatacatgtatatcaaGGAGACTCTCATGCAAAGTTTGTTACAGCCCAAGCTGTATAAGATAAGAGGtggcatatatatttttcttaaaagtgAAATAGTTAAGTTTAAAGTAGCTTAATTAATGTGAGAATTGGATCGTTTGGTTAGAATCACAGATTGTCAATAACTTGAGACCTTGTCAATTTTCTgccctttcaaaatgttgcattttctgTGATATCTGTGTCTTGGAAGGTTCAATAAGTCCAGAAAACCTTTTACAGGtggtgtaaatatttgttattgattTGCACAGTTAACATATGGAGaacatttgatatttaaatcTTGCTCTTGTAAAGATAGAAACGGTAAATCAGTTTTTTgttaccaaaaatatatttgatgtatGCTAATTTTATTGCAGCTGGGAAATAAGACATTTTTACTGTAGTTGACTCAAAGCAGACTCttgatttttataatttattaacattaaattgAAGTGTGAGAGCCTTTTTCTATTTAAGTAATTGAAATGACTCGGGTGacattattttatggttttctgCCAGgcgttatttaaaaaaaactgtatagtTTCCTGGAGAGCTAGATCACCTAAATTAGCAGAATTAAAGCCCTTATCTTATTTGATATTATTTCTGCAGTTAATTATTACTGGGATGCAATTGTGCTACAGAAGTTGTGATTCCATTCTGCCACTTGGTGTCACTATAGCCCTGTAAATTCAATTAAGTTCGTTGAAAATATGagaagttttgttttcaaagtaaatCTAAATCtggatatttattattacaatctTACCTTTAGTCCTTTATGTATGTAATGCACCTTTCttccagtccagtcctgttTAGCGAGTGCCTCTGGTTTCCAATtctcttaattagttaattgagctcattattcacttaactgaacacatgatttatttgtcttttaatgaCTGGATCTGAAGGATTTTGCACATTAATTAGGTCAGTGCATACCATTGAATCAATAATCTATCAATCAAACTGCTCAACTGCAGCTTCTACCTTTCAACGAGCAACTAATTAAGACCTGGAAAGAACAGTCAATTTGGCTTCTTATCCTAATAATGACATCAAGCAAGTAATTAGGTCCTGAGGTGGAACAGAAAATCGGCCACCCCTGCAGCACTCGAGGACTGGAAGCACCCCCCCGTTAGAGCCTCCTCTGACAGCTCTGCTAACAGGCAGCCCTGTCAGTCAGCCAGCCGTTGATCGGTCTCCCTCTCGAACGGGGTCTCACCTCTTGGGAGACGGTGCTGCTCTCCTTCCTCACCCCCTCTGAGGCAAACACCTCTCCGTGCCCCTGGACCTGCAAACAGAGCGGTAATGACACCGGGGGAAGGAGGATGTTGGGATCTGCAGAGAGGCGCTGATCGCAGTTTGACAGCTGCTCTGATGTGttgcccccccccaaccccatccGTTTAAATAGTCAAAGGAATATGTCGAcgggcacagagacacagtgaagAGTTTCATGCTGTTCGATCAGGTGTGGCCGACCCGCGTCCTGCAGAGCCCCGGGGATGCCAGGTTTCTGTTTCATCCAGAGCATTTactgcttaattgagccaatcGTGGGTCTTAATTAGTCTAACTATCCCTGTGTTCCAGATGTCCTGTGATTGGTGAATTAGAGAGGCTTAGATATAGAGTGAATCTCCCCTGTGTCTTACCACCTCCAACCCGAGTCAGAGATATTCAGCTTTGAGATGAATGAACTACTGTATCAATAAACCCTGCTCAGTTTCAGAATCGTTATCCAACTGTCCAGCTCAGGTGTAgggtaattaagtaattgagcactttttttttgtactgtggTGTTTCCCCACTGTGTGGCCTCATTGACAGACAATTATTGATCAAATAAAGGAATAGAAAATTCCCTATTAAAATACTTTCAGTGAGGAAAAAGCTATAAAATGTGTTCACTATTGGGTTTTTGTGAACAGACAATAAACCCCTCACTACCTCAGTAACCTGGCTTTAAACCAGGCTTTTAGGATTTTGCACAGGTGTGTCATGTTCTCGCTAATTCCCTGTCACTTCTGTCTTGTTGTCTACTTATTATTTCTGTGTAGTTCAAACATTAGACTACCGGCACTCCAGAGCAGTGTAGAGCACAATTATGTAAATAGGctaataaagaaaatctcattAAAGGAAGGGagtttaatgaaagaaaatgaaaatcactgcatcaattatacaaatgaaaagttattttcGGCATTTCTTTTCCTACAGTGAGAACTGTTTGACACTGCTTTCATGAACCCTCAATATCCCAGATACAGAGTGGAAATGTGTCCtgtactgatttgtttttcGACTCGAAAAATGATTCACACACCTGTGATGAAATATTTATTGCAGGTCCTCTGAGCAGAGAACAGTAATTGCTCAAAGTGCCCACCGTTGTATTGTGTTGTAGTTGTGCAgcaatatatataacaatgtaaCCTCAGCTGACAAGATTACAGCTCTTGTTGAGTTACGATTGCGGAGTACAAATGAAAGAGTTTATTAAGTTTTCAAGCTCTCGAGTTTTCTATTGCTGCACTGCGATGCATTTCTCTGAACAAGGTCTTCTTAACACTTGTGTCTCTATCAGTGAAGAGCTGAGattaaaaatgattgaaaataaa

Function

GO: NA

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006486 True 4211 mRNA 0.44 3 5979127 5984291

Neighbor

gene id symbol gene type direction distance location
AMCG00006481 NA coding downstream 195982 5772245 ~ 5783145 (-)
AMCG00006482 NA coding downstream 281471 5664975 ~ 5697656 (-)
AMCG00006477 NA coding downstream 322006 5653275 ~ 5657121 (-)
AMCG00006472 NA coding downstream 427270 5550817 ~ 5551857 (-)
AMCG00006474 NA coding downstream 445080 5518671 ~ 5534047 (-)
AMCG00006492 NA coding upstream 2359 5986650 ~ 5991143 (-)
AMCG00006490 NA coding upstream 10523 5994814 ~ 6001150 (-)
AMCG00006493 celsr1,LOC108427079 coding upstream 67036 6051327 ~ 6067994 (-)
AMCG00006496 LOC106576003 coding upstream 106934 6091225 ~ 6097143 (-)
AMCG00006498 NA coding upstream 207681 6191972 ~ 6217508 (-)
G110015 NA non-coding downstream 123625 5853814 ~ 5855502 (-)
G109996 NA non-coding downstream 174675 5803498 ~ 5804452 (-)
G109995 NA non-coding downstream 175866 5802572 ~ 5803261 (-)
G109916 NA non-coding downstream 543363 5434937 ~ 5435764 (-)
G109878 NA non-coding downstream 569556 5409340 ~ 5409571 (-)
G110152 NA non-coding upstream 835947 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 927585 6911876 ~ 6912252 (-)
G110168 NA non-coding upstream 953122 6937413 ~ 6937803 (-)
G110169 NA non-coding upstream 959896 6944187 ~ 6944474 (-)
G110202 NA non-coding upstream 1158963 7143254 ~ 7143678 (-)
AMCG00006476 NA other downstream 375394 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 1701972 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 1802075 4168050 ~ 4177052 (-)
G109633 NA other downstream 1813527 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 1821004 4152816 ~ 4158123 (-)
AMCG00006491 NA other upstream 29813 6014104 ~ 6042924 (-)
G110140 NA other upstream 801022 6785313 ~ 6785851 (-)
G110195 NA other upstream 1094098 7078389 ~ 7107138 (-)
G110507 NA other upstream 2738097 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 2799614 8783905 ~ 8794062 (-)

Expression


Co-expression Network