AMCG00006488


Basic Information

Item Value
gene id AMCG00006488
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5989489 ~ 5996070 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006488
GATTACCGGAACCCCCGAGTTATCGCGATGCTGTCCTGGCCAATGCAGAGCGGGGCTTTAAGTCACATGACCGTCTGGCTATTGGTTGCAGAATTTGAATTTTGTTATGGCATTATTGGGGTAAAGGAAGTAAATTTCGCAGTCTTGTTCATTATGGTTCTTCAGtacaattgcatttaattacaaacGTGTTGTTTTGGGCGAACAGTTCAAGTATTTCGTTAAATATAAGTCGCGTTACTGCGTTGTTTTCATGCGGTGTTTGGCTCATGAAGACAGTTACTGACCTTCGCAAGTGATCTGTGTGTATTTAGTGACTGTAGTTGGTTTTAATCACAATTTTCAATTCGTGTTGTAATATCTGAGCTGAGCGAGTGTTTGGGACAGTTTGGGCAGCAATACATCTTCTTGGATCGGTCCCCATATATTATAGTGGgcctgctactactactactactactactactactacactactACATTGGCGAAGATCTGGAATAAACGCGTTCTGAAAGTCGACTTGTTACATTGACTGGGAAGAGAATGGATTCACTGAACTGCAATGAATTTGTTCCCCTGGCAGAGGAGAAGTTTGATTTTGACATCTCATTGTCACCCACAAGTGGCAGTGGTGACAATGAGGACGATGATGAAGTGTTTCTGGGGCCGGTCCGCCATAAAGAGAAATGCGTAGCGGTGGGGCTTGACCTGCAGACGGACGACAAGGAGAATGCTCGGCCCTCGGGTGGCGGCTGGAGTCCGTTAGCTGGAGACAAGTTTGTTGAAATTTTTAAAGAAGCCCATTTATTGGCCCAGCGCTTTGAAAACAGCACCGACGGTCCTCGGGCTTCAGTGAAGCCACGGGTGAAAGCCGGGACGAACGAGGTGGTGGAAAAGTTTGTAGAAGATTCCAGGTCTAAACTGAACCTCTTCAACACCCCGAGAGATCCTGCCATCAGCCCTGTGAAGAGAGAAACCTACTGCGTTCAGGACAGCCCCTTTAAGCAGCTTCCTCCAGCGATCCAGCAACGTCTCCTCAGGTCACAATCTGCTGCAAGTCCTATAAAACAAACCTCCGTCTCGTCCAGTCCAGCCAGAGCTTGTAAAACCCAATTGCACAAACCCAGTCTAGGAAGTAAAGCAGCTCTAGCCTATGCCAGTCGAGTGCTTCCTAACAGAGCCATGGCTCCCCCGACGAGGGAGCAAACTGAAGAAATGAGAAGCAATCTGGCTGCAACGAAGCCTAAAGCTGCTCTGAAAAACAGCCCTCCCAGAGTACGACACAGCAGCGCAGAGTCCCTGGAGGATCCTAACTCGGACAATGCTAGTTTTACTTCAGATGTGAGCGATTCGTCCTTAAAAAGTGCTCTGCCAGTAAAGAGGATGGTCCCTGTTCCTAAAAAGATCGGTCTGCATAAACCACATGCCATAAAACCGCCAGCTCAGCGGAACAAAAGGATCATGCCCGACAAGAAAAGAGGGGCCTCGTCTTCCTCTTCGTCCTCCCTGTCGAGTATGAACTCCAGTCTCTCGGTCTCCCCTGCGGTCAATGCGGGTAAACCTAATTCATCTCTAAACTCGTCTGTGAGTAAAGTAACGCAGACGCACCGATTGGCAGCACCTAAGGCAGGAGGGAGCCTGTCCACTTCTGTCCAAGCGAAGAAAGCCCTGGCCCTTCCCTCCAAACTGACGAAGTCGTCCAGTCTGAACAAGCTTTCGACTCCCCTGAGGAAACCAGACCCTGCCAATCCACACCAGACACCGGCTGAGAGTCGCGCGCAGAGGCTGGGCTCGGTACCGGGCTTGTCCAGTTCCTCGGCGCAGATCAAGACAGCGAGTGCGGCGAAAGGCAGCCCCAAACCGAAGGCCTCCGTGGCCCCCACGCCAACGGGCTACTTCAGAGGCGCGCAGCAGTCGGGAGcttcttcacctgACAACGCATCTAGGATAATGAAACCTAAGAGATTGATGACTTCTGTTAATGACAGTGATGCCCAGCCAGACGTGGCCGCTAGTGTTTCAGCCACAGACTGTTTTCAAACCCCCACCCTCACTGCGAAGACCAAGTCGGCGATGTCCAAGTTGAGGCGCTGCTCAGCCTTGCCCACGCCGGTCAACAGGCGCACCTCCGGGATCCCGGCCCTGACGCCCAAGAGCGTGACCAGGCGCTCCGTCTTCAGTCTGACGTCCGAGACCCTTGAAGTCTCTCTGTCCACCAAGAAACGATACCTTGTAAGTCCCACAGAGGGCAGAGATCCGCGGCAGTGTGCGCTCCAGAGCCACTCAGTGTCCAGGAAAGAGCCTTGTCCTCCGTCGCCCATTCCTCTCTGCTCGATGGACTTCTCTCCGGAAGAAGAGGATCATCCGAACCCACCCGAGCAGGAGTCTGCTGAAGTCCCGGTCCCTGAGGTACCCAGAGATCCTTCTGTGGGACACTCCGATGAAGACTCTGAAGATAAAGAGGTGCCGGCCCTTCCAGCACCTGAAGAGCAGTGGAAGGAGGACGCTGTTATGAGCCCAGAGCAGGAGGAGGTCTTGCTGGTGGAAGTGGCTGCACCTCCTGTCCTGAGGATGGAAGACCGACACCTCATCGACCTCTCCAACACCCCCGAGCTCATTAAAACGGCACCAATGAAGCCAGCTGTGAATGGACAGTTAATTGACCTGAGTTCTCCTCTCATAACTCTGAGTCCTGTGGCCAAGAGAGAGAGTTCTGTGGATTCGCCTCTGATCAAGTTCTCATTTTAGTGCAAACCTGTTTTAAGTCTGTCGAATCTTTGATTTTACAATGTAGTAGTTTtaaaagattatataaaaagaaaagctgtaatAATTACAAGGTTGGAATTTAATGCTATAATAAAGGTTTTGAATGGCAATGAAGAGTTTGACAATCTGAATTTAGCTTTGATTGCACATAAATGGGTAATTTTTCAGGTGTGACAAATCAAATCTGGGATtcaaattaagttttttttcatttattcccTTGAGGACACAATATTCCACTTCTTGTTTAATTTGACTTTGCTCACTTTTTTTGAAATCTTTGTACAATacagttattttctgttatttcgTCTTTCCTGTCATAATAAATCTTGCTGCTTGTTCTTGAA

Function

GO: NA

KEGG:

id description
K10129 GTSE1, B99; G-2 and S-phase expressed protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006488 True 3119 mRNA 0.49 12 5989489 5996070

Neighbor

gene id symbol gene type direction distance location
AMCG00006487 NA coding upstream 3493 5984473 ~ 5985996 (+)
AMCG00006483 cpne8,LOC108427072,LOC108279828,LOC101074159,LOC102297242 coding upstream 31439 5918930 ~ 5958050 (+)
AMCG00006485 NA coding upstream 135038 5808944 ~ 5854451 (+)
AMCG00006484 abcd2,LOC107566844,LOC107689723,LOC107689245,LOC105891163,LOC106609116,LOC106575983 coding upstream 191182 5783737 ~ 5798307 (+)
AMCG00006479 NA coding upstream 219843 5763354 ~ 5769646 (+)
AMCG00006489 trmu coding downstream 5051 6001121 ~ 6009470 (+)
AMCG00006495 gramd4 coding downstream 112525 6108595 ~ 6128500 (+)
AMCG00006494 gramd4 coding downstream 139437 6135507 ~ 6150798 (+)
AMCG00006497 NA coding downstream 226747 6222817 ~ 6234153 (+)
AMCG00006499 tbc1d22a coding downstream 258918 6254988 ~ 6267136 (+)
G110024 NA non-coding upstream 5239 5983790 ~ 5984250 (+)
G109978 NA non-coding upstream 184930 5799600 ~ 5804559 (+)
G109933 NA non-coding upstream 443053 5546207 ~ 5546436 (+)
G109837 NA non-coding upstream 636319 5352456 ~ 5353170 (+)
G109786 NA non-coding upstream 944856 5044416 ~ 5044633 (+)
G110081 NA non-coding downstream 222461 6218531 ~ 6220086 (+)
G110147 NA non-coding downstream 799679 6795749 ~ 6795994 (+)
G110161 NA non-coding downstream 859810 6855880 ~ 6857998 (+)
G110167 NA non-coding downstream 941174 6937244 ~ 6937664 (+)
G110201 NA non-coding downstream 1147197 7143267 ~ 7143659 (+)
G110023 NA other upstream 6580 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 854774 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 882467 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 890791 5080881 ~ 5098698 (+)
G109781 NA other upstream 963583 5024895 ~ 5025906 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other downstream 523795 6519865 ~ 6588399 (+)
G110163 LOC100846954 other downstream 915806 6911876 ~ 6912254 (+)
G110279 NA other downstream 1657602 7653672 ~ 7655194 (+)
G110445 NA other downstream 2179690 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 2714680 8710750 ~ 8724066 (+)

Expression


Co-expression Network