AMCG00006490


Basic Information

Item Value
gene id AMCG00006490
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 5994814 ~ 6001150 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006490
GGGAAACACGGCGCTGCACTACAGTCTCGCTCCCTCTGCCTGTCCTGTGATTGtgacttgtttttctcttgtggGGTGTGTTGCAGTAACTTTTCCCGTTactgtttggttttgttaaaccGCCTTGTCAAAAAATGGACGACTCTTGTGTAAATGTAATTAGTCTGGAGATGCTGAAGGAGGCCAGAGAGACAGTGATGGGCAGCCCGTTAGGGGTGATTAATACTGCCCTCATCCCCTGGCATCAGACCACCCTGCCGCCCAGCGTCGCCTGCTCCCTGCACCTCAAGATGGAGAACATGCAACGAACCGGTTCCTTTAAGATCAGGGGTGTCGCCAATCAGTTTGCCAGGAGGCCAGAGGGAGGTCAGTTTGTTAGCATGTCTGCTGGGAACTATGGGAAGGCTTTTGCTTTTGCCTCCAAGCATTATGGCACCCGAGGGAAAATAGTGATGCCAGAAACagccccttcctccagagcaaCTCTGATTGCTAGTTTCGGAGTTGAAGTGGAAAAGGCACCAACAACGCGTGTGCTGAGTGTCGTGGAGCGCTGTATCCGTGAGGACAATATGACGTTCCTGCACCCCTATGATGACATCGACCTGATCGCTGGGCACGGAAGTCTCGGTCTGGAAATCCTGGAAGTCGTGCCAGACCCTGATATCGTGGTCGTGTGCTGCGGGGGAGGAGGGTTACTTGCGGGGGCTGCAGCTGCTATTAAACTTTCAAACAGTCGTACAAAAGTGTACGGAGTGGAACCAGAAGGAGCCTGTACCATGTATAAGAGCTTCATTGAGAAGAAACCTGTATCAATGGATGCACAAAGCATCGCCTCAGGGCTGGCACCACCATGTGCAGGTGACCTCACCTACAGGATCTGCCAGCAGCACGTGGAGGGGATCGTGCTGGTGAGCGAGGAGCAGATCGAGGCGGCCGTCTCCACCCTGTACCGGGCCGGGCTGGTGGTGGAGCCGGCCGGAGCCGCGGCCTTCGCTGCCCTGGCGGAGGACAAGATCCCAGACGCCGCAGGGAAGAGCGTAGTGGTGGTCCTAAGCGGAGGCAATGTGGGGAAGGAGGAGCTGATGCACTTCCCCGACTAGAGCAGCAGGACAGTCTTCATAGTCGGACGGTAGTCTTCATCAAGTTGGGTTCATAAGAGAGCTCTGAATAGAAATCACTGACTTCAAGAACAAGCAGCAAGATTTATTATGACAGGAAAGAcgaaataacagaaaataactgtATTGTACAAAGATTTCAAAAAAAGTGAGCAAAGTCAAATTAAACAAGAAGTGGAATATTGTGTCCTCAAgggaataaatgaaaaaaaacttaatttgaATCCCAGATTTGATTTGTCACACCTGAAAAATTACCCATTTATGTGCAATCAAAGCTAAATTCAGATTGTCAAACTCTTCATTGCCATTCAAAACCTTTATTATAGCATTAAATTCCAACCTTGTAATTattacagcttttctttttatataatcttttaAAACTACTACATTGTAAAATCAAAGATTCGACAGACTTAAAACAGGTTTGCACTAAAATGAGAACTTGATCAGAGGCGAATCCACAGAACTCTCTCTCTTGGCCACAGGACTCAGAGTTATGAGAGGAGAACTCAGGTCAATTAACTGTCCATTCACAGCTGGCTTCATTGGTGCCGTTTTAATGAGCTCGGGGGTGTTGGAGAGGTCGATGAGGTGTCGGTCTTCCATCCTCAGGACAGGAGGTGCAGCCACTTCCACCAGCAAGACCTTTAgcaaaaacacagcagagaTCCACGTACACAATCAACTCACTGGGTCTTGGGATTTACAGTTTAGCTTTAAATATGCCCGACGTCGGGTTTGTGACCATGGGACCTGGCACCCATACAGAAGAACACGG

Function

GO: NA

KEGG:

id description
K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006490 True 1905 mRNA 0.49 8 5994814 6001150

Neighbor

gene id symbol gene type direction distance location
AMCG00006492 NA coding downstream 3671 5986650 ~ 5991143 (-)
AMCG00006486 NA coding downstream 10523 5979127 ~ 5984291 (-)
AMCG00006481 NA coding downstream 211669 5772245 ~ 5783145 (-)
AMCG00006482 NA coding downstream 297158 5664975 ~ 5697656 (-)
AMCG00006477 NA coding downstream 337693 5653275 ~ 5657121 (-)
AMCG00006493 celsr1,LOC108427079 coding upstream 50177 6051327 ~ 6067994 (-)
AMCG00006496 LOC106576003 coding upstream 90075 6091225 ~ 6097143 (-)
AMCG00006498 NA coding upstream 190822 6191972 ~ 6217508 (-)
AMCG00006502 NA coding upstream 753631 6754781 ~ 6768791 (-)
AMCG00006503 NA coding upstream 777217 6778367 ~ 6779464 (-)
G110015 NA non-coding downstream 139312 5853814 ~ 5855502 (-)
G109996 NA non-coding downstream 190362 5803498 ~ 5804452 (-)
G109995 NA non-coding downstream 191553 5802572 ~ 5803261 (-)
G109916 NA non-coding downstream 559050 5434937 ~ 5435764 (-)
G109878 NA non-coding downstream 585243 5409340 ~ 5409571 (-)
G110152 NA non-coding upstream 819088 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 910726 6911876 ~ 6912252 (-)
G110168 NA non-coding upstream 936263 6937413 ~ 6937803 (-)
G110169 NA non-coding upstream 943037 6944187 ~ 6944474 (-)
G110202 NA non-coding upstream 1142104 7143254 ~ 7143678 (-)
AMCG00006476 NA other downstream 391081 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 1717659 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 1817762 4168050 ~ 4177052 (-)
G109633 NA other downstream 1829214 4164934 ~ 4165600 (-)
AMCG00006414 NA other downstream 1836691 4152816 ~ 4158123 (-)
AMCG00006491 NA other upstream 12954 6014104 ~ 6042924 (-)
G110140 NA other upstream 784163 6785313 ~ 6785851 (-)
G110195 NA other upstream 1077239 7078389 ~ 7107138 (-)
G110507 NA other upstream 2721238 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 2782755 8783905 ~ 8794062 (-)

Expression


Co-expression Network