AMCG00006493 (celsr1,LOC108427079)


Basic Information

Item Value
gene id AMCG00006493
gene name celsr1,LOC108427079
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6051327 ~ 6067994 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006493
ATGGGGAATGCTGTGACTGCGGTGACCTCTCCTCTCCCGAGCTATTCCTGGGCTCCCCAGAGGAGACTGCCGGTGCAGGGATACGGGATCCACCGGGTCACGGCCATCTGCACGCTGAGAGTCACCATCATCACCGACGACATGCTGACCAACAGCATCACGGTACGGCTGGAGAACATGTCCCAGGAGCGCTTCCTCTCTCCGCTGCTGTCGCTCTTCGTGGAGGGCGTGGCGACCGTCCTCTCCACCACCCGGGACGGCATCTTCGTCTTCAACATCCAGAACGACACGGACGTCCACGGCCACATCCTGAACGTCACCTTCTCCGCCCTGCTGCCCGGCGGCCTCCGCAACCAGTTCTTCCCCTCGGAGGACCTGCAGGAGCAGATCTACCTGAACCGCACGCTGCTGACGCTCATCTCCACACAGAGGGTGCTGCCCTTCGATGACAACATCTGTCTGCGCGAGCCCTGCGAGAACTACATGAAGTGCGTGTCGGTGCTCAAGTTCGACAGCTCGGCGCCCTTCATCAGCTCCAACACCGTGCTCTTCCGGCCCATCCACCCCATCAATGGGCTGCGCTGCCGGTGTCCGCCGGGCTTCACCGGGGAACTGTGCGAGACCGAGATCGACCTGTGCTACTCGGCGCCCTGCTTCAACAACGGCACCTGCCGGAGCCGTGAGGGCGGCTACACCTGCGAGTGTCACGAGGATTTCACAGGGGAGCACTGTGAGGTGAACGCGCGTTCGGGACGCTGTGCCCCCGGAATCTGTAAGAATGGGGGCACCTGCATCAACCTGCTGGTGGGCGGCTTCCGGTGCGAGTGCCCCCCGGGGGAGTACGAGCGGCCGTACTGCGAGATGACCACGAGGAGCTTCCCGGCCCAGTCCTTCGTCACCTTCAAGGGCCTGCGCCAGCGATTCCACTTCACCGTGTCCCTCACGTTCGCTACGCGGGAAAGGAATGCCTTGCTTCTTTACAACGGACGTTTTAACGAGAAGCACGACTTTATTGCGCTGGAGATAATCGACGAGCAGGTCCAGCTGACGTTCTCCGCAGGTGAGGCTAAAACCACAGTCGCCCCGTTTGTCCAAGGAGGCGTCAGCGATGGCCAATGGCATTCAGTCCAGCTCCACTACTATAACAAGGCTGCTACCGAGACGCTGCCCCGTGGTTGGGCTGGGGGGACGGGCCTATGTGCTTCAAAGGAAGGAAGCTCTCAGGAGCTCAGGATGCTCAGACAGGCGCAATTACCTCATCTCCTCAGTCTGGCTTGA

Function

symbol description
celsr1 Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Predicted to be involved in cell-cell adhesion; establishment of planar polarity; and neural tube closure. Predicted to act upstream of or within several processes, including Rho protein signal transduction; apical protein localization; and morphogenesis of an epithelium. Located in nucleoplasm and plasma membrane. Implicated in hereditary lymphedema.

NR:

description
PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1-like isoform X2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006493 True 1278 mRNA 0.61 6 6051327 6067994

Neighbor

gene id symbol gene type direction distance location
AMCG00006490 NA coding downstream 50177 5994814 ~ 6001150 (-)
AMCG00006492 NA coding downstream 60184 5986650 ~ 5991143 (-)
AMCG00006486 NA coding downstream 67036 5979127 ~ 5984291 (-)
AMCG00006481 NA coding downstream 268182 5772245 ~ 5783145 (-)
AMCG00006482 NA coding downstream 353671 5664975 ~ 5697656 (-)
AMCG00006496 LOC106576003 coding upstream 23231 6091225 ~ 6097143 (-)
AMCG00006498 NA coding upstream 123978 6191972 ~ 6217508 (-)
AMCG00006502 NA coding upstream 686787 6754781 ~ 6768791 (-)
AMCG00006503 NA coding upstream 710373 6778367 ~ 6779464 (-)
AMCG00006506 pim3 coding upstream 787742 6855736 ~ 6860515 (-)
G110015 NA non-coding downstream 195825 5853814 ~ 5855502 (-)
G109996 NA non-coding downstream 246875 5803498 ~ 5804452 (-)
G109995 NA non-coding downstream 248066 5802572 ~ 5803261 (-)
G109916 NA non-coding downstream 615563 5434937 ~ 5435764 (-)
G109878 NA non-coding downstream 641756 5409340 ~ 5409571 (-)
G110152 NA non-coding upstream 752244 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 843882 6911876 ~ 6912252 (-)
G110168 NA non-coding upstream 869419 6937413 ~ 6937803 (-)
G110169 NA non-coding upstream 876193 6944187 ~ 6944474 (-)
G110202 NA non-coding upstream 1075260 7143254 ~ 7143678 (-)
AMCG00006491 NA other downstream 8403 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 447594 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 1774172 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 1874275 4168050 ~ 4177052 (-)
G109633 NA other downstream 1885727 4164934 ~ 4165600 (-)
G110140 NA other upstream 717319 6785313 ~ 6785851 (-)
G110195 NA other upstream 1010395 7078389 ~ 7107138 (-)
G110507 NA other upstream 2654394 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 2715911 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 2929643 8997637 ~ 8999264 (-)

Expression


Co-expression Network