AMCG00006496 (LOC106576003)


Basic Information

Item Value
gene id AMCG00006496
gene name LOC106576003
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6091225 ~ 6097143 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006496
ATGGCACTGGCGGCGCACTGGGTCTGGCTCCCTCTCCTGCTCCAGTGCCCCATGCTGGGCTGCTTCGACCTGCACCTCTCGGACACTTTGCAGGCGGGGGCTGTGCTGGCAAACCTGTCTCTGGGACCCGGTTGGATCTACAAAATCGACCGGACTTTGACTCCCAAGTACATGAGAAACTTTGTGGAGATGGACGCGCAGGACGGGGCGCTGCGTCTCTCTCGCAGACTGGACTGCGGGCGGCTGCTGGACAACCCGGCGCCGCTGTTCGCAAAGATCAGGTCTGTGGGCTCGGATGACTTCATTTTAACGCATTTTAACGCCTTCGTGCACGGCCAGGACTGTTTCATCAAGTACAAGAGAAAGCACGCCGCAGGTAAGCCCGATCTCTACATTAACTACCTTTCCAAAGTGGACGCGGCGTCCTGCGTCTCCGCCGGGAATCTGCTCCTGAGTGTGAAAGCGCATTTGCCGGGGTTCACCCGCAACCTGGCCTTTTTGAACTCCACCTGCACCGAGACGGACTGGAGGATGGTCTTCAATAATGGGAGTCTGACACTGAGTGGGAACCGCTGCCTGCAGCCCGGGGAGAGGGGCGAGGTGGACTTGCTGTGCACCCTGCAGAACTGGCACCAGGAGCACATCTCGGTGCGGGTGAAATTGCGCTTTATGACAGTGGACGAGCAGGGGCTGCTTCTCGACCATGCCAGGCGTAAAATAAACCCGTGGGGCAAACGGAAGAAGAGAAACGTGAACGCAGTCCCCCAGTTCCAGCTGCCCAACTACCAGGTGTCTGTGGCGGAGAACGAGCCGGCCGGGACCGGGGTCATCACGCTCAAGGCCACCGACCCAGATGAAGGAGAAGCCGGGAGGTTAGATTACACCATGGAGGCCCTTTTCGACAGCAGATCCAATGACTATTTCTACATGGACTCCCAAACGggcaccatcaccaccacccaGGCTCTGGACAGGGAGGTGAAGGACACCCACGTCTTCAAGGTGATGGCTGCGGACAACGGGACGCCCAGAAGGTTTACCATCGCCTATCTCACGGTCACTGTCAGCGACACCAATGACCACAGCCCCATCTTCGAGCAAACCGAGTATAAAGTCTCCATCAGGGAAAACCTGGAGGTGGGCTTTGAGGTCATGACCATCCGGGCCACCGATGGAGATGCGCCTTCTAATGCTAATATGATCTACAGGATTGTGAACGGAGACGGGAACAACTCCGCTTTTGAAATTGACCCCAGGACAGGGCTGGTTAGGATCAGGGTGCGTCCAGACAGAGAGACCATGTCCAAATACCAGTTAATCGTGGAGGCTAACGACCAAGGCAAGGACCCGGGTCCCAGGAGTGCCACGGCCACCGTATACATCACAGTAGAGGATGAGAATGACAACTCCCCTCAGTTCAGTGAGAAGAGATATGTGGTCCAGGTGCCTGAAAACATTGCAGTGAACAGCAAAGTGGCACAGGTGGAGGCGACGGACAAGGACGAAGGCAACAATGCCAAAGTCCATTACAGCATCATCAGCGGGAATGTGAAAGGGCAGTTTTACATCCACTCGCCCACCGGCGTCATCGACGTCATCAACCCCCTGGATTACGAGATCATCAGGGAGTATAATCTGCGAATCAAAGCGCAGGATGGAGGGCGGCCGCCTTTGATCAACAGCACGGGGCTGGTGGTGGTGCAGGTCGTGGATGTGAACGACAACGCGCCCATGTTCGTCAGCACGCCTTTCCAAGCGACTGTGCTGGAGAACGTCCCCATCGGCTACTCGGTCATCCACATCCAGGCCATCGACGCCGACGCCGGGGAGAACTCACGCTTGGAGTACAGGCTAATCGATACACCCCCGGGTTTCCCCTTCACGATCAATAACAGCACGGGCTGGATTACAGTCTCGGCTGAGCTGGACAGGGAGACAATTGACTATTACAACTTTGGCATCGAAGCAAGGGACCATGGGATCCCGGTCATGTCTTCCTCGGCGAGCGTCAGCATAACAGTGTTGGACGTGAATGACAACATCCCGACTTTCACTGAAAAAGTCTACTATCTGAGGATAAACGAAGACGCGGTCGTGGGCAGCAGCGTGCTGACCGTCACGGCCGTGGACAGAGATGTCAACAGCGTCGTCACCTATCAGATTTCCAGTGGAAACACTCGGAACAGATTCGCAATTACTAGCCAGAGTGGTGGCGGCCTAATAACTTTAGCTCTGCCCTTGGATTATAAACAGGAGAGACAGTACGTCCTGACTGTCACTGCCTCCGATGGCACACGCTTCGACACGGCCCAGGTCTTCATCAATGTCACGGACGCCAACACACACAGGCCTGTCTTCCAGAGCGCGAATTATCAAGTGCTTATAAGCGAAGACAAACCCATCGGCACGACAGTGGTAGTGATAAGTGCGACGGACGAAGACACGGGGGAGAATGCGAGAATCACGTACATCATGGAAGACAATGTCCCTCAGTTTAAGATCGAACCTGATACAGGGGCCATCACCACCCAGATGGAAATTGACTATGAAGACCAGGCTTCCTACACCTTGGCAATCATCGCCAGAGATAACGGGATCCCCCAGAAATCGGACACCACGTACGTTGAGATTATTGTCCTGGACGCCAATGACAATGCCCCCCAGTTTCTCCGAGACATGTACCAGGGCAATGTCTTTGAGGATGCACCTGTGTACACCAGCGTCCTGCAGATATCTGCCTCCGACAGGGATTCGGCGTCCAACGGAAGAGTGAGCTACACTTTCCAAGGTGGGGACGACGGGGACGGGGACTTTGTCATCGAGCAGTACTCTGGAATCATCAGGACGGCCCGGAAGCTGGACAGGGAGAACGTCCCGGTTTATAACCTGAAAGCCTACGCCGTGGACAAGGGCGTCCCACCTCTGAAGGCCGCGGTGGATATTCAGATCTCCGTGCTGGACATTAACGACAACCCGCCTGTGTTCGAGAAGGATGAGTTTGACATCTACGTGGAGGAAAACAGTGCCGTGGGCTCCATCGTGGCCCGGATCACGGCCACCGACCCAGACGAGGGCACCAACGCCCAGATCATGTACCAGATTGTGGAGGGGAATATCCCAGAGGTGTTCCAGCTGGATATTTTCAATggagacctgatcgccctcacGGATTTAGATTACGAGGCCAAACGGGAGTACGTGATTGTTGTCCAGGCGACGTCTGCCCCGCTGGTCAGCCGGGCCATCGTTCACATCCGCCTTGTGGATATAAATGACAATGACCCCGTTCTGCAGGACTTTGAGATCATCTTCAACAACTATGTCACCAACAAGTCCAACAGCTTTCCCTCCGGAGTAATAGGGAAGGTGCCCGCGTACGACCCCGACGTATCGGATAAGCTTCACTATGCCTTCATAGAGGGCAATGAGTTGAGTCTGCTGCTCCTCAACCAAGACACGGGGGAGCTGAAGCTCAGCAGAGACCTGGATAATAACAGAGCGCTGGAGGCCCACATGAAAGTGTCAGTCACAGGGATGGAGGTGTAA

Function

NR:

description
PREDICTED: cadherin EGF LAG seven-pass G-type receptor 1-like

GO: NA

KEGG:

id description
K04600 CELSR1; cadherin EGF LAG seven-pass G-type receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006496 True 3546 mRNA 0.55 2 6091225 6097143

Neighbor

gene id symbol gene type direction distance location
AMCG00006493 celsr1,LOC108427079 coding downstream 23231 6051327 ~ 6067994 (-)
AMCG00006490 NA coding downstream 90075 5994814 ~ 6001150 (-)
AMCG00006492 NA coding downstream 100082 5986650 ~ 5991143 (-)
AMCG00006486 NA coding downstream 106934 5979127 ~ 5984291 (-)
AMCG00006481 NA coding downstream 308080 5772245 ~ 5783145 (-)
AMCG00006498 NA coding upstream 94829 6191972 ~ 6217508 (-)
AMCG00006502 NA coding upstream 657638 6754781 ~ 6768791 (-)
AMCG00006503 NA coding upstream 681224 6778367 ~ 6779464 (-)
AMCG00006506 pim3 coding upstream 758593 6855736 ~ 6860515 (-)
AMCG00006507 NA coding upstream 900404 6997547 ~ 7004873 (-)
G110015 NA non-coding downstream 235723 5853814 ~ 5855502 (-)
G109996 NA non-coding downstream 286773 5803498 ~ 5804452 (-)
G109995 NA non-coding downstream 287964 5802572 ~ 5803261 (-)
G109916 NA non-coding downstream 655461 5434937 ~ 5435764 (-)
G109878 NA non-coding downstream 681654 5409340 ~ 5409571 (-)
G110152 NA non-coding upstream 723095 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 814733 6911876 ~ 6912252 (-)
G110168 NA non-coding upstream 840270 6937413 ~ 6937803 (-)
G110169 NA non-coding upstream 847044 6944187 ~ 6944474 (-)
G110202 NA non-coding upstream 1046111 7143254 ~ 7143678 (-)
AMCG00006491 NA other downstream 48301 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 487492 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 1814070 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 1914173 4168050 ~ 4177052 (-)
G109633 NA other downstream 1925625 4164934 ~ 4165600 (-)
G110140 NA other upstream 688170 6785313 ~ 6785851 (-)
G110195 NA other upstream 981246 7078389 ~ 7107138 (-)
G110507 NA other upstream 2625245 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 2686762 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 2900494 8997637 ~ 8999264 (-)

Expression


Co-expression Network