AMCG00006498


Basic Information

Item Value
gene id AMCG00006498
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6191972 ~ 6217508 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006498
ATGGAAAAACAGCCCACAGTGCTGACCTCCCAGCTGTGGATCAAAAGCAGGGCTCACGAAGTCACCTTCAACCGGGCGCTGCTGACATGGAGGCAGCTGGAGACGGGCAAGAAGCGGGTCTCCGGGCCCCTCCGAGCCGGTTTCTGCCTGGCAGAGGTTCTCCACAGAACGAGAGGAGTGACTCCAGGTAACCGCTGTGTGCCTGTGTCCGAAATTATTGCCGTTCGAGAGACAGAAGTGGACTGCCAAACGAAAGACAATGGGAAATGGCAGAAGATGTCACAGAAAACATCTGAGGCGTATCCGTACGCCTTCACAGTGTTCTATGTGGATCGAGCCGGGCAGCACCGCTGGCGTTGTGGCAGTGTGACGTTCTCCAGCAGCAATGCGGTTCTATGTCAACACTGGGTCCAGTCCATCAAGGAGCAGCTGGCATTGCTAACATGTCGACCGAAGCACTTGCTGGTGTATATTAATCCATACGGAGGAAAACAACAGGGCAAGCAGATTTATGAACAGAAAGTGGCTCGGCTCTTCTCTCTGGCTTCGGTTTCCACGGACGTGATTGTTACAGAGTGTGCGAATCATGCCAGGGACCATTTGAGAACTGAGGCCGACCTCTGGAAATATGATGGCATTGTTTGCGTCGGGGGGGACGGGATGTTCAGTGAGGTCATTCATGGGTTAATCTCGCGGACGCAGAAGGACTCTGGAGTGGACCAGAACTGTACCAAGGAAAAACTGGTTCAGTGCAGCCTCCGGGTTGGGATTATTCCAGCAGGTTCAACCGACTGCATCTGCTACGCAACGGTGGGCATTAATGACCCGGTGACGTCGGCCTTGCATATTGTCGTGGGCGACTCGCAGCCCATGGACGTGTGCTCGGTGCACCATAACAACACGTTTCTCAAGTACTCGGTGTCCTTACTGGGATACGGCTTTTACGGAGATGTGCTGACGGACAGTGAGAAGAAGCGATGGATGGGCCCGGCCCGATATGACATTTCAGGTATCAAGACATTCCTGTCCCATCACTACTACGAAGGGACGATATCCTTTCTACCAGCCAACGATGTCTTGGGGAATCCAAGAGACAAAACCAAGTGCAGAGCTGGTTGTTACATCTGCCAACACAATGGACAACTTCTCTCTAAAGAAGGAAAGGGAGGCAGGGGTGAGAGCGCCTTTAATGGGAATGGGGATGAAGGAGACTGGAAGGAGATCCAGGGGAAGTTTCTGGCCATCAACGCAGCCAGCATGAGCTGTGCCTGTCCCCGCAGTCCCAAAGGCCTGTCCCCAGCTGCACACCTGGCCGACGGCACCACCGACATCATCCTGGTGCGCAAGTGCTCCCGGCTCAACTTCCTGCGCCACCTGCTGCGCCACACCAGCAACTATGACCAGGTGCACCGAGTGAGAAAATTCAGGTTCACGCCAAAGTACTGCAAGTCTGAAGACCCCGACTTGAAGGATGTAAGGAAGAAGCTCTTCggccagatctgcagggaccaCCCGGCCTGCAGCTGCAGCACGGCAAACAGTAACTGGAACTGCGACGGGGAGATCCTCGACCACGCTGCGATAGAAGTGGGAGTTCACTGCCAATTGATAAAGCTCTTCGCAAGAGGAATTGAGGAGAAGCCCATTTTTGAAGACGTCTGTGGCCCCTGTGCAGTTTAGACACCAGAAGCGAACAAACGACTGGAGCAATATCCTCAAAATCTATTTTGTGATAAGAACGCCCCTTCAATAGATGTTTTTAgcattaaaaactatatatttaaatcggATGTtgatgcaaaaactaaaaacaaaacaaaaattgccAATGTTGCTTCAGTTTTGAAGAGAAAGTACCTTAAAACGTTTGCAATTACCCATGCAAACCGGGACGTCTGTGTACCGATGCGTTTCCTAGTTGATTCTTACTGCATTTATGGTGCTAAATCCTAGCTATgattttaaatggcatttcTTTAACACAGCTTTAGCGAGAAAGATACGATTTGATTCTGCCATCATTTTTCACTCACTTTGCTTCAGGGAAACGAGGGGCAATGTGGGAAATGGGCACAGCCTCCCGAACCTGACTTTCATGTTAGGAAGGATAGAAACATGAACTCATTAAGGATGTATGTTACTGCTGTAAAGCCACAACATGTGTTACTGTTGCAGTATGCATTTGTAGGAAGATTGCAAGAATGCATAACTTATGTTCAGGATACCACTGTTCATTTCTGCATTGTTAAACATCTAAGGTATGGATCACCGTCAGAATTTCAGGACTCAATATTAGCTGCCTCTACGTATATATTCCATGGGACTTTTTCCGTGGCAATTTAACGTACACCGCAAAAGCAAAATTAGCACTTTTCTAAGGATTTTGTGTACAGCATTAACgaataagaaaaagacaaaaatactcACCCAAGTCTTAACCTCTGGCTGAAACTTGATTCTCCTTCTTTAGCTTCATATGACATCTTGCAACTTGTCAATGCAAAGTATAGAATAACATTCCAGATGTAACGGTGGTCCATGTCACTCATGTCTCGCAGCAACATCTAAAGCTTTTTTTGGGGCATTTAAGTAGTATTTGCTAAATATTTTTCCATAGAGAACAGGTATACttgtttactgtactgtacaatatataacaaatccatattttaaacGCAGGAATATATTTATTACTAATTACTGTAGGAAATGCAGGTATTTAATAAGGTTAGTGTATGTTCACTGTGTGAATAGCTTTCTAGCTGTAGTTTGGTTCCATCCAAATAACTACTGTGTACCCTTGAACCTCCACAACAACCAACTCCAAAATGGGTTTTCTGTGTAGTTGTGTTATTGCTGTTATCCTCATGACTCCACAATCGATTCAGTTTCCCCGATTTTAGCTTTGTGTTGTCCAGCACTTGCTCATCATGTAAGCTGCCACGAGCATCTTGTATGACCACagcattaaacattttgttttagattttatgttattatgtttattttaagtttcgCTGCTGAATTCTGTGCCTGACTGCAGGTCTAAGTGATTTATCAGGTGAAACTCTCCTGGCTCTTCtaatgatatttatttatatatatatatatatatatatatatatatatatatatatagctatagcTATATTTTGTTCCATATTATGTAAGCAGCACATAACACCGATTTATGCACCATAACATGGACAGGAGAAGCTGCTGACAGTACTCGGATAGTCCCCCCGTGTATTGCTGCCATGCATTATAGCCTCATTACTCCACAAGGAGAAGGCTCATTTAGGGAAAGCTTGATTTCCCCTCTCAACACAACGGCTCAGTGTTGCAGACTCAGCAACACGTAAATAATCGTCTGAGCCACCGAACAAGTCTTTCTGCAGCCTGCCACACATTCCGCAGGGCCAGACCGTTCATCTCTAAAGGATGGCGCTCGGCTAAGTTCCCAGGCCAAAGGTGACTCAAATATCAATCAGTTATTCCTCACAGGGTACCTAAGTGGTTGTTTCATGACTGACTGGTTACAATCCCTTTATTATCTTGCTGGCTTCGAGATGACAATGGTTTGTACTCCACAAAGTTGATAACTGTTGTGTGGATTGTGTGATTTATTGGACATCATgtaaaaggaataaataaaggaaaaacaattgGAA

Function

GO: NA

KEGG:

id description
K04715 CERK; ceramide kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006498 True 3671 mRNA 0.45 14 6191972 6217508

Neighbor

gene id symbol gene type direction distance location
AMCG00006496 LOC106576003 coding downstream 94829 6091225 ~ 6097143 (-)
AMCG00006493 celsr1,LOC108427079 coding downstream 123978 6051327 ~ 6067994 (-)
AMCG00006490 NA coding downstream 190822 5994814 ~ 6001150 (-)
AMCG00006492 NA coding downstream 200829 5986650 ~ 5991143 (-)
AMCG00006486 NA coding downstream 207681 5979127 ~ 5984291 (-)
AMCG00006502 NA coding upstream 537273 6754781 ~ 6768791 (-)
AMCG00006503 NA coding upstream 560859 6778367 ~ 6779464 (-)
AMCG00006506 pim3 coding upstream 638228 6855736 ~ 6860515 (-)
AMCG00006507 NA coding upstream 780039 6997547 ~ 7004873 (-)
AMCG00006513 NA coding upstream 860812 7078320 ~ 7089125 (-)
G110015 NA non-coding downstream 336470 5853814 ~ 5855502 (-)
G109996 NA non-coding downstream 387520 5803498 ~ 5804452 (-)
G109995 NA non-coding downstream 388711 5802572 ~ 5803261 (-)
G109916 NA non-coding downstream 756208 5434937 ~ 5435764 (-)
G109878 NA non-coding downstream 782401 5409340 ~ 5409571 (-)
G110152 NA non-coding upstream 602730 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 694368 6911876 ~ 6912252 (-)
G110168 NA non-coding upstream 719905 6937413 ~ 6937803 (-)
G110169 NA non-coding upstream 726679 6944187 ~ 6944474 (-)
G110202 NA non-coding upstream 925746 7143254 ~ 7143678 (-)
AMCG00006491 NA other downstream 149048 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 588239 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 1914817 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 2014920 4168050 ~ 4177052 (-)
G109633 NA other downstream 2026372 4164934 ~ 4165600 (-)
G110140 NA other upstream 567805 6785313 ~ 6785851 (-)
G110195 NA other upstream 860881 7078389 ~ 7107138 (-)
G110507 NA other upstream 2504880 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 2566397 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 2780129 8997637 ~ 8999264 (-)

Expression


Co-expression Network