AMCG00006501 (fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475)


Basic Information

Item Value
gene id AMCG00006501
gene name fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6519865 ~ 6588399 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006501
ATGTCTCCAAAAACAAGCCACGATGATGCACTGGCTCGGGAGATCGCTTTGAGTGAGGAGCTCAGATCCAGTATTTGTGAAATTGGACTGATGGGTCAACTAGCCGCTGGCACGTGCGAAATCGTCACTCTGGACAGGGACAGCAGTCAACCGCGGAGGACCATAGCCAGGCAAACGGCACGATGTGCGTGTAAAAAAGGACAAATCGCGGGGACGACCAGAGCACGGCCTGCTTGCGTTGACGAGAAGACGGTAGCAGACTTGCCCCCAGGAGAGCAGAGTTACCCGTCTAGCTAA
>TU137861
GCGTCCTAACATGCGGGTATTGGATTTGTAGCCAGTGCATAGCTACCCAGGTAACAGTTTGACATTGCACCGGCGTTGTTAATCGTTGCAGAAACGTTGTGTGTTACTGGGGTATAACTTGTATCTGCCAGCGTCTGGGAGAGACACACATTTCAGAGGCGTGACGTCAGCGGGAGAGCGGAGAGAAAGTCGCGCCTGGATCTGCGGTGTTTAAATAACAGGGGCAAGTCTGGGTAGCTGGCAAAGAGTGAGAGATCAGCCTGCAACACACTGGGCATTCATTGCAACTTCTCTTTATTCCGACGAGCAATCGGGactgcacagcacacagccaACCGGTTTGAAAGCAAGCAAGAGAAATATACCTAGACATGGGCATTTGTGCAGCCACTTGCGATCATGCCAGACGCGTCAGCCCGAGATGCGAGGAGGAATTGAAtccaactggaaaaaaaagtctCCAAGAGGGAAACTACAGCGAAGTGAAGATGGATGCATGTTAACACAGCAGCCCCGGACTGGAAGATGTATCCCCATGCGGAGGAAACAGCACATTAATTTGAAGCATTTGCTGCACAGGGACATGGTGATGCAAGGCGGGTTGTGCGCCCGGGTGATGTCTGCGATCCTGCGCGGAGAGGTGTGAGCTGTGGGCACTGAATCCCGGTGCCAGCCTTTACAGAAGAGCCCGCAATAACTGGGGATCTGGCAGGTGAAGGTGAATATTGTCGTGAGAGACTCCCTCCCTTCAGGGATGCTGACGATGCGCATTTCCTTCGGGATTTTAATTGAAAGGTTGAGAAGTTTGCACTTTTTTTGTCCGTATTGCTGGACAACACTTTGATGCGTTTGAGCTCCTGTAACGCAGGGGAAACGACTGAATAAAACGCGCAGAGGACATCCGTGGATTGCCCCCgtttggatgtttttgttttttttgcattgtttttctttccagtgcGTAGTGAACTAGGATTGGGATTTTAAGGTGTTTTTTGTTGCACAGGATGGATGTCCCATTAATCCTGTGAAGATCCCTGGCTCGGCTTGGGGGGTGTTTGAGTTGCAGACCACGATGCAGCTCCTCAAAGCGGCGTGGGCTTTAGCGGCAGCGGCAATCTgctgttttgtgatttttttcatcCACTCCCAGTTCCTTAAAGAagGTCAACTAGCCGCTGGCACGTGCGAAATCGTCACTCTGGACAGGGACAGCAGTCAACCGCGGAGGACCATAGCCAGGCAAACGGCACGATGTGCGTGTAAAAAAGGACAAATCGCGGGGACGACCAGAGCACGGCCTGCTTGCGTTGACGCGCGAATTGTAAAGGCAAAGCAGTGGTGTGAAATGCTTCCCTGTTTGGAAGGTGAAGGATGTAATTTGTTAGTAAATAAATCAGGCTGGACTTGTACGCAACCTGGAGGCCgagttaaaacaacaacaGTCTCCTGACAAACGTAGCAACAGCGAATCCTCAGAGGGGCGGTTTAGACTCTGTGTGAGCTACCTACCTTAGTCAAGTTTCACTGCTGGATCATCTGTTGTGTGTCATCAGCTCAACTGTCTCTCTGTATTGTATAAGACAGCTTAATTCCTTCTGCTACGAGCTTAAGTCTGTTCCACACCGCGCTGGAGTACAGGATCGCAGGAGGCCGACCTCTGAGATGTTGACTCCACACTCGTGCTACACAGTGGATCCCACACAGGATTGCCCCCTGCCGTTGGATCTCATGTGGACCGCATGGCCAACGCAGAGGAAACTGGTTTGCCAAGGACTGGACTCATAGTTCTGCGGGCCCAGCACCACACACGGGACAAACGGACCTATTCCTGAGTGCGGGGGCCTTGAGGAGACTCACTCTGTCGCTCTCATGATATTTATGCAGACCaaagaacaacaagaacaacaaaaggATGTTGAGATGGGCGAGGTTCATTTGTGCATCGCCAGGGTCCTTTGGAACATTACAAATGAAGCCTTTACTCAAGAGCTACACAACGGAGGTGTCATGGAGTTAAAGGTCCGAGAACATGAACTGCTCTGCTGTGATGGAGTGCAGTCGCACCCCTGTGACAGTACTGACCTTCTAAAAGGAGCACCTTTCATTCTTTGCTGACTATTTTTTTCTTGGACTGAATTCATTACTCTATTTTGAACCTGAAGACAATATATGcgcaacacacgcacacacacacacatatatatatttgtttatatgtacgaatacatatatacatatatatatatagagatagatagatagatagttagaTATACTTGCAAAGTTGCAATTTTTCAAATGCTACATCTGGACAATTTGCAATAAGCATGGATGGGTTACAGTAATACAACGATCCCATTTATCACCAcagaagaaataattaaatgtttgggggaagaaaaaaatcattaaatgtattttgaaaagcctaaagttatatatttaacagttttataTGTTGTATCTTTGTAGAAAACcttatttaacacaaataatgtgGTCACTATGCCAGTCATAAAAAGTGGATACAAGAAGAGCTTGGTTTTCATTCTGCTTTTCTATTtcgttttctttgtttgtcaCAAAAGTGGCTGttgaattatatacatttttttatatctcCATTGGaatatttgaatttaaagaTCATAATCAACAAGAACTTGTAAAAAAGAATATCAAAAATCAACAATATAAGTCATACCCCATTAATATATTGCATCACTGCCCTGTTTCTAGGCATATCTGTCCgattgtactgtatattaccGTGAAATACGTCACTAATTgtctcattttcatttcctttttttcttgtgttgcaCAGCGCAGACCTCAAGAGTGATGATACTTGAATggatgaatgaaaaaaatagaatcatttgcattaaaaaatacttttttattataaaatattttaagaaagaaataaatacatgaaacaacTATTACTTGCCAAGCAGAGATGTTCACGGATGACTTGATGAACCGAGAGAGACCAACATTAAGAACATATTCACGATGCTTCTCTGAGATTCTCATATTGTAGTTGCCTGGAAGAGTTTTAGAgtgattaagaacataagaaagtttccaat

Function

NR:

description
PREDICTED: protein FAM19A5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006501 False 297 mRNA 0.55 3 6541397 6546903
TU137861 True 3101 TUCP 0.44 5 6519865 6588399

Neighbor

gene id symbol gene type direction distance location
AMCG00006500 tbc1d22a coding upstream 185022 6287734 ~ 6334843 (+)
AMCG00006499 tbc1d22a coding upstream 252729 6254988 ~ 6267136 (+)
AMCG00006497 NA coding upstream 285712 6222817 ~ 6234153 (+)
AMCG00006494 gramd4 coding upstream 369067 6135507 ~ 6150798 (+)
AMCG00006495 gramd4 coding upstream 391365 6108595 ~ 6128500 (+)
AMCG00006504 NA coding downstream 189572 6777971 ~ 6783364 (+)
AMCG00006505 NA coding downstream 198455 6786854 ~ 6793168 (+)
AMCG00006510 NA coding downstream 428420 7016819 ~ 7029460 (+)
AMCG00006511 NA coding downstream 469239 7057638 ~ 7058515 (+)
AMCG00006508 NA coding downstream 520945 7109344 ~ 7116757 (+)
G110081 NA non-coding upstream 299779 6218531 ~ 6220086 (+)
G110024 NA non-coding upstream 535615 5983790 ~ 5984250 (+)
G109978 NA non-coding upstream 715306 5799600 ~ 5804559 (+)
G109933 NA non-coding upstream 973429 5546207 ~ 5546436 (+)
G109837 NA non-coding upstream 1166695 5352456 ~ 5353170 (+)
G110147 NA non-coding downstream 207350 6795749 ~ 6795994 (+)
G110161 NA non-coding downstream 267481 6855880 ~ 6857998 (+)
G110167 NA non-coding downstream 348845 6937244 ~ 6937664 (+)
G110201 NA non-coding downstream 554868 7143267 ~ 7143659 (+)
G110240 NA non-coding downstream 651687 7240086 ~ 7240557 (+)
G110023 NA other upstream 536956 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 1385150 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 1412843 5094271 ~ 5107022 (+)
G109795 wasl,wasla,LOC105018628 other upstream 1421167 5080881 ~ 5098698 (+)
G109781 NA other upstream 1493959 5024895 ~ 5025906 (+)
G110163 LOC100846954 other downstream 323477 6911876 ~ 6912254 (+)
G110279 NA other downstream 1065273 7653672 ~ 7655194 (+)
G110445 NA other downstream 1587361 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 2122351 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 2975553 9563952 ~ 9568276 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110521323 LOC106561036 misc NC_050570.1 CM025857.1 11683849 ~ 11796935 (+)