AMCG00006502


Basic Information

Item Value
gene id AMCG00006502
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6754781 ~ 6768791 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006502
ATGGTTGCAAAAGCATTACTTTACATCTACTTTCTGAACCCAAAGCTCTCTCAGCAGTTTCTGAAAGCGTGcatcaacacaacacactgctgCGCAACAACTGTGCCAGGGCAATGCCAGTGCATAGTGCGTGTAGAAATATCTTTCTTTAATAAGACGGTGTGCACAGATCGTAattctgataataataataaaagtgacgAAGACTGCTGTGCGCGGAGTGACTGGAGAGCGACGCGATTGGCCGGCGTGCTGCTGGCGGTGCGCAGGCTCGGTGCGCCTGTGCGCGGCGTGCTGCGTGCTGCGTGGCGGGTGGGACCTCCAGCCGCCGCATTGTTGTTGGGGGAGAGAGGAGCGCTGGGCAGCTGCTGTTCGGCACTGGCAAGCGGACGACCTCGGTTTCCGAATGGTCCTTTTCCGTGCTCACTGCCCGCCGAGGACCGACCCGCGATACACACCCGCCCGGCTGCGGTGGCGACGCCCGAGCGCGGAGAGCTGAGCGGCGGCGAGCCCGAGCGGCGGCCGTTGGACGAGAGAGTGCGGAATCACAGCCGCTCCGCAGGCCACAGCGCCATTGCTGCTGCGAGCGCCGCCGTCTTGGGGGGAGCCGAGACCCGTGGGACTGCGAGGTTTAAGGTGTCCAATatgaggaggaagagcaggCATCATCGAGTGTCAACAGCCAAACGGTCCACCTCGCCCTGTAACATCAAGCACTCCCCGACGCGGGAGACTCTGACATACGCGCAAGCCCAGCGAATGGTTGAGATGGAGATTGATGGCCGCCTGCACAGAATAAGTATTTTCGACACGTTAGAGATCATATCGGAAGATGACCTCACTGCCCAAGAGCTGAGCGAGTGTAATAGCAATAAAGAGAACAGCGAGAGACCACAGATACTGGTGAGATCcaaaagactgaaaaacaaCCTCAAAAAGAAGAACGCCGCACTGCTAAACGCACATGGGGTGCAGGCGTCTGGAAGCTCCCTCCCGGAACCCAAAATCCGCATTGTGGAGTATAACCCCCCGCCGGCCCCTCGGCGACCTCCCTCGTATTACACGTTCGTCGAGAAGTCCCCGGACGAGCTCGACAAAGAGGTTGAGTATGATATGGACGAGGAAGACTACGCCTGGTTGGAGCTGGTGAACGAGAAGCGGAGAAGTGAGGGCTTGAGCGCCGTCTCTCAGAACGTCTTCGAGTTCCTCATGGACCGGTTCGAGAAGGAGTCCTTCTTCGAGAGCCAGAACCAGGGGGACCCCCAGTCCCTCATCGACGAGGACGCGGTGTGCTGCATATGCATGGACGGCGAGTGCCAGAACAGCAATGTCATCCTGTTCTGTGACATGTGCAACCTGGCCGTGCACCAGGAGTGTTACGGAGTGCCATACATCCCCGAGGGCCAGTGGCTCTGCAGACATTGCTTACAGTCCCCCTCCCAGCCTGTGGACTGTGTGCTCTGCCCCAATAAGGGCGGGGCTTTTAAAAAGACGGACGATGATCGCTGGGGACACGTGGTCTGCGCCCTGTGGGTACCTGAGGTGGGCTTTGCAAACACGGTATTTATCGAGCCCATCGATGGCGTGAGGAACATCCCCCCAGCTAGGTGGAAACTGACGTGCTACCTCTGTAAAGAGAAGGGCGTCGGCGCTTGCATCCAGTGCCACCGAGCAAATTGTTACACGGCGTTTCACGTGAGTTGTGCTCAAAAGGCAGGCCTGTACATGAAAATGGAGCCCGTGAGGGAGGTCACGGACACTGCCACGACGTTTTCGGTCAAGAAAACGGCCTACTGTGATGCCCACACGCCGCCGGGCTGCGTCAGGAGGCCTTTGACGATCTACGAAGAAGCCAAAACCAAAAACGGACTTTGTcagaagggggagaaaaaaagtggAAGGACAAGATTAAAAGGcagacaaagaaataaaaagagtaAGAAAGCTCTAGCTGAACCTTTGGCAGCTGTTCCAACCGTATCTGTACCCAGTATTCCTCCTCAAaggttaaACAAAATTCTCAATCAAGTTGCTGTTCAGAGGAAGAAGCTTTTCATCGAGCGGATATTGAATTACTGGACACTGAAGAGACAGTCCAGGAATGGCGTGCCACTGCTGAGACGCTTACAGTCCAGCCTGCAGTCACAGAGAAACACGCAGCAGCGAGAGAACGACGAAGAAAGCCGCGTACTGAAAGAGCAGCTGAAGTGCTGGCACCGGCTGCGGCACGACCTGGAGAGAGCTCGGCTGCTGGTGGAACTGATCCGCAAGCGGGAGAAGTTAAAAAGAGAAGAGATTAAAGTCCATCAGGTTGCTCTGGAGCTGCAGCTGACCCCTTTCACAGTCCTCCTGCGCTCAGTCCTCgagcagctgcaggagaaggACACTTCCAAGATATTTGCCCAGCCAGTGAGCCTTAAAGAGGTTCCGGATTACTTGGACCACATCAAACAGCCCATGGACTTCTCCACCATGAGGAAGCGCATTGAATCGCACGGATATAAGAACCTGGACGAGTTCGAGGAGGATTTCAACCTCATTATCGAGAACTGTATGAAGTACAATGCGAAAGAGACGATCTTCTACAGGGCTGCCGTCCGCTTGAGAGATCAGGGAGGGGCTGTGTTGAGGCAGAGCCGGCGTGAAGCTGAATGTATAGGATTCGATTATGAAACTGGAATGCACTTGCCTGAACCACCAAAGATTGAACCACCACCGCCTTTTTCTTGGGAAGATGTGGATCGGCTACTGATTCCAGCAAACCGAGAGCACATGCCTTTAGAGCAACAGCTTCAAGAGCTCCTGGAGAAACTTGACCTGACGAGTGCGATGAAATCAAGTGCTTCGCGGAATAAGCGCACCAAGCTGTTGAAAAAAGAAATCGCCAACGTACGATATGAGATCAGCCTGGCGAAGACTCAGACTCAGGCCCCACATCTGCAGACCAATAAACCGCCTGTCGAAGAGGTCGCGCCCGCAGGACAAAATACAGAGGATgatgGAGACAAGTCGCTACCACCAAAGCTAGAACCATCGGACTCTTTGCTGCCTCCTCTAAATTCTGACAGTAATTCAGAACCGCCCACACTCAAACCCATCGACCCCAGCCCCGAGAACAATAAGTTGCACAAACGGGTCAAGTTTGACAGCGAGACATGTCCCAGCCCCCCTCCGAAGGAAATATTAATAAACGGGCACGCTCCGGAGCACCTGCTGGCAAACAGCGATGTCAGTGTGGTGGCCACCTCGACGTTGGCAGACTCCTCGAGCGACGTCAACAGGCGGACTTCCGTACTTTTTCGAAAATCTAAAAGTGTAAGTCCACAAAAACCTGGGAAAATCGGTGACGCGCAGCCGAGTTCTCCGCAGCTAGGAACCAAAACGTTTTTGTCTGTGGTTATTCCAAGATTGGAGACTCTTCTCCAGCCAAGGAAGAGGTCCCGGAGTGCTTGTGGAGAAAGTGAAGGAGAAGAGGAATCCCCGGTGAAGCGCTTTGACACGGGGCTCTCTAATGGGTTTGGCAATGAGGAACACAAAGAACTCAATCCGGCCAAAAAACTAGAACCCCGTCGCCGATGTGCCTCCGAATCGAGTATCTCCTCAAGTGGCAGCCTCTTATGCAACACAAGTTTCAGCCTTCCAAAGTGTGGCAAAGGAAAACCAGCCCTTGTACGCAGGAATACCATTGAAGACAAAAATGAGTTAATAGCTTGTATCGAAACTGGAAACTTTGCCAAAGCTGCACGGATTGCGGCAGAAGTTGGCAACAGCAATATCTGGATGCCTGCTAGTGCTGCAACTGTTGTTCTGGAACCTCTTAAACTAGTTTGGGCAAAATGTAGTGGATACCCATCCTACCCTGCCCTGaTAATAGATCCAAAAATGCCTCGTGTTGGTTGCCACCATAACGGGGTGTCAATACCAATACCTCCTATGGATGTCCTTAGGATAGGTGAACAAATGCAGTATAAGTCAGAAGAGAAGCTCTTCCTTGTTCTCTTTTTCGACAACAAAAGGAGCTGGCAATGGCTTCCTAAATCAAAAATGGTTCCCCTGGGAATCGACAAGACCATCGACAAGATCAAAATGATGGAGGGCCGGACCTCGAGCGTCCGCAAAGCCGTGAGGACCGCCTTCGAGCGCGCCATGAGCCACCTGAGCCGAGTGCAGGGCGAGCCGGCCAGCGACTTCAGCGACGTCGACTGAGCCGGCGCTCCCCAGCCGCCAGCCCACCTCGCCTGCTCTGCTTTACGAGCTGATCGCTGTTACTTGATGAATGTGCTAGAGTCTATATTCCTCGATTTCCCTCGATTCAGAAGCTGTTCTGCCAAGGACGAGTCACTCGAACGCTCACTGCCATATTGAATCAAGACATTGCCCATAACTCACGATACAAAGAGCTTTCCACCTTTTGGATATTAATGTAgttctatatttaataaaatttgTAAATAGATGTATAATGCCTGAAGCTTTAACTTATTCTGTagattttttggtttattttataaattggtacagtaccttgcttttcctaatatttatactttaaaataatgtacagcCGCACTATCATCTGGTCTTTACTGGTGCTATACACATTGTAAAATCCTAGTTTTACGTTAAAGACTGAAATAGGGCTATAAGATACTGTATTCAAcgtcatttcattttttttttttttaaatcgacTAAGTTATTGAAGTTTATCTACATAAGCTTCCCCTCCtggcattatttttttttttcctttttaaataaatatatataaattagaatGTTTTTATGagaattttactttttgtttgtatatatttatataaatctatatatctGTAAAACGGAAATGCTTCACTGGGAAAGCTTTAGTAGATACGAGAAACCCGAAGTACATAATTTTCATGACACCAAAAAGTTTGCTGCccagactttttttatttttatttctgtctgtatAGCGTGTAATGTATTTCATGAACTgtattgccttttatttttttatatattttttgtctgttacTGGGACCTGTGTTTGAACTTTTGAAGATGTGcctgattgtttttatttattgtgaaagtATATGCATTACTTTATATACAAACTGAGACATTGAAAGTGGTATAATGTTTGTAGGCACATTTAGAAACTAGTTTAGGTGAAATACTGGGGTTTTGTGTATAAATTACTGTAATCAGATTTTCATATCCTGTAATTTTGACAGTTGAGCTGTAGAGTTTGtgatatttgttcatttatttaggAACCTGGGTAGCTATAGactttttgaatacattttgtatggtATGTGTTATGTACATAGATTttagtatgatttattttattttattttatttggggaCAAGAAAAGCATTAGGTGAAGATATGGGTGGGTTTCCagtttccaga

Function

GO: NA

KEGG:

id description
K11349 BRD1, BRPF2; bromodomain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006502 True 5407 mRNA 0.49 13 6754781 6768791

Neighbor

gene id symbol gene type direction distance location
AMCG00006498 NA coding downstream 537273 6191972 ~ 6217508 (-)
AMCG00006496 LOC106576003 coding downstream 657638 6091225 ~ 6097143 (-)
AMCG00006493 celsr1,LOC108427079 coding downstream 686787 6051327 ~ 6067994 (-)
AMCG00006490 NA coding downstream 753631 5994814 ~ 6001150 (-)
AMCG00006492 NA coding downstream 763638 5986650 ~ 5991143 (-)
AMCG00006503 NA coding upstream 9576 6778367 ~ 6779464 (-)
AMCG00006506 pim3 coding upstream 86945 6855736 ~ 6860515 (-)
AMCG00006507 NA coding upstream 228756 6997547 ~ 7004873 (-)
AMCG00006513 NA coding upstream 309529 7078320 ~ 7089125 (-)
AMCG00006512 NA coding upstream 329792 7098583 ~ 7106776 (-)
G110015 NA non-coding downstream 899279 5853814 ~ 5855502 (-)
G109996 NA non-coding downstream 950329 5803498 ~ 5804452 (-)
G109995 NA non-coding downstream 951520 5802572 ~ 5803261 (-)
G109916 NA non-coding downstream 1319017 5434937 ~ 5435764 (-)
G109878 NA non-coding downstream 1345210 5409340 ~ 5409571 (-)
G110152 NA non-coding upstream 51447 6820238 ~ 6820568 (-)
G110165 LOC100846954 non-coding upstream 143085 6911876 ~ 6912252 (-)
G110168 NA non-coding upstream 168622 6937413 ~ 6937803 (-)
G110169 NA non-coding upstream 175396 6944187 ~ 6944474 (-)
G110202 NA non-coding upstream 374463 7143254 ~ 7143678 (-)
AMCG00006491 NA other downstream 711857 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 1151048 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 2477626 4270416 ~ 4277155 (-)
AMCG00006415 NA other downstream 2577729 4168050 ~ 4177052 (-)
G109633 NA other downstream 2589181 4164934 ~ 4165600 (-)
G110140 NA other upstream 16522 6785313 ~ 6785851 (-)
G110195 NA other upstream 309598 7078389 ~ 7107138 (-)
G110507 NA other upstream 1953597 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 2015114 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 2228846 8997637 ~ 8999264 (-)

Expression


Co-expression Network