AMCG00006509


Basic Information

Item Value
gene id AMCG00006509
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7149305 ~ 7183103 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006509
GAGTTGGAGGAGTGGATGCTGCTGCAAAATCCAGGAGTCATGGCAGGGCTTGCGTTGTTTCAGGTGATGGTCCCAGCCCTGGTTCTCTCCAGCTGCGTCTTGTGCTTCACCCAGCCCATGCCAAGAATCTATTTGACGTTTGAAGATGTGCCCAGAAGAGCAGTTGCAGTGAATCAAAGCCTAAAAAGAGCCGGGACGTTTGCGGCAAGTGCAGGGTCCTTTGCCAGGCTTTACGTGCCCGGACAGCCTGCAGCTGAGACGCCTGGCACCGCGTCGATGAACTTGATCCGGCTGCGGCTGAGACTGGAGCGAACAGCAGTGTTGCTCATGAATACTGCCCAGTTTCCAGTGGCTAGCGACTCGAGGGCCGCACGTCCCCAGATCTCTCCTGAGCAGAATAGTGCGCCGCTGTTCTTGCAGGTCAAAGAATCGGGCCCTGAAAGAAGCTGCCTTTTTCAGAGTACCCTCGAGTGGCTCTCGCCCAGATCAGGCCTCGCTATGAATGCCAAGTTAGGCTTTTCACTGGAGAACAGCTTCATCGaactgcaggacacacagtcATTCGAGCACTACAGCCTGTCCGAGTTCCCCATGGACTACCGCATCCTCCTGATGGACGAGGACCAAGATCGCATGTATCTGGGCTGCAAAGATCACGTGTTGTCCATGAGCATCAATAACATTACCCGGGGGCCTTTAAAGGTGTTTTGGCCAGCCTCCAGCAGCAAAATTGATGAGTGCAGAATGGCTGGCAAAGATCCGATGCATGGCTGTGGCAATTTTGTGCGTGTGATCCAGCCGTACAATCGCACACACTTATTTATATGTGGCAGCGGAGCCTTCAGTCCGGTGTGTGCCTATATCAACAGAGGTCGAAGGTCAGAAGAACAAGTGTTTTATATCGACTCCAAGGCTGAATCTGGAAAGGGAAGGTGCTCCTTTAATCCCAGTGTTAACACAGTGTCAGTTATGATCAATGAAGAGCTGTTTTCAGGCATGTACATTGACTTCATGGGGACGGACGCTGCCATTTTTAGAAGCGTGACGAGGAGAAACGCAATCAGAACGGACCAACACAACTCAAAGTGGCTGAGTGAACCCATCTTCATTGATGCCCAGCTGATTCCCGATGGCTCAGACCCCAATGATGCCAAACTATACTTTTTCTTCAGAGAGAGGATGACAGACAACAGTGGCAACACCAAGCACATCCACACCATGGTGGCTAGGATATGCCCAAATGACATTGGTGGTCAGAGGAGTCTGGTGAATAAGTGGACAACGTTCCTCAAAGCAAGACTCGTGTGCTCAGTGGTAGAGGGGGACGGCACGGAGACACACTTTGATGAGCTAGAGGATATATTTTTGCTGGAAACAGAACAGCCCAAGAACCTTTTAGTGTTTGGGATTTTCACATCCTCAAGTTCAGTGTTCAAGGGCTCAGCAGTGTGTGTTTACAATATGGCAGATATCCTAACTGTGTTTAATGGCCCATTTGCCCACAAGGAAGGCCCAAACCACCAGTGGGTTGCATACCAAGGCAGAATTCCTTACCCCAGACCTGGTACATGCCCCGGAGGAGCCTTCACTCCGAACCTATTGACGACCAAGGATTTCCCAGACGATGTAGTTACTTTCATTAGGAACCACCCTGTCATGTACAATCCCATCTACCCAATAAATAAGAGACCGCTCGTTGTGAGAGCTCACGCTGACTATAAATACACAGCAATAGCAGTTGATCAAGTCATTGCCGCAGATGGAAAATACCATGTCTTGTTTCTGGGCACAGATAAAGGGACTGTGCAGAAAATGATTGTGCTTCCCACTAACAGATCGCAAGATACGGAGCTTATCTTAGAGGAGCTGGAAGTGTTTAAGaATCATGTTCCTGTGACCACAATGAAAATTTCATCcaaaaagATCTCCCTGCACCGCTGCCAGGCCTACGGCTCGGCCTGTGCTGACTGCTGCTTGGCCAGAGACCCCTACTGCGCCTGGGACGGCATGACCTGCTCCAGGTTCTATCCCACCGGGAAGAGAAATGCGGCCGAGATGGTGCAATATGCGGTGAAGAACAACACCACGTTTCTGGAGTGTTTGCCGAAGTCTCCGCAAGCATCTGTGAAATGGCTAATTCAGAGGGAAAACGACAGGAGGAAAGAGGTCAAGTTAAACGACAGAGTCTTATTGACAGAGCACGGGCTGCTGCTGAGATACGTACGGGACTCCGACCAAGGCCTGTACTACTGCCTAGCCACCGAGAACAGCTTCAAACAAACTGTGGCCAAAATAAAGCTGAAGGTGATCAGCACTGAGCTGGTGTCCTCCGTGACGGACAAAAAGCACCCCTGGTCTTGGGCCAGTTCTCTGAGTGGCTATCAACTCCATTCCAAGGACTTTATCGGGATGTTTAGCCACGCTGAAATGCAAACCATTAACCAGTACTGCAAGGAGAACAGGCAGCGGGAGAGAATGGAAACGCTGAGGGGGGACCTGGCCAAACTGAAGCCCCTCATGGACCGAAGGAAGAGCAGAAACCGGAGGAATCACCTCCCCGAGTCGTAG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006509 True 2568 mRNA 0.51 19 7149305 7183103

Neighbor

gene id symbol gene type direction distance location
AMCG00006508 NA coding upstream 32548 7109344 ~ 7116757 (+)
AMCG00006511 NA coding upstream 90790 7057638 ~ 7058515 (+)
AMCG00006510 NA coding upstream 119845 7016819 ~ 7029460 (+)
AMCG00006505 NA coding upstream 356137 6786854 ~ 6793168 (+)
AMCG00006504 NA coding upstream 365941 6777971 ~ 6783364 (+)
AMCG00006515 gnai1,LOC107386448,LOC108279833,LOC107590838,LOC100706147 coding downstream 43030 7226133 ~ 7235139 (+)
AMCG00006516 magi2,LOC107554949,LOC107574163,LOC107753655,LOC107661469 coding downstream 106901 7290004 ~ 7290669 (+)
AMCG00006517 magi2,magi2a,LOC107694149,LOC107755877 coding downstream 301041 7484144 ~ 7490138 (+)
AMCG00006518 NA coding downstream 358710 7541813 ~ 7577273 (+)
AMCG00006519 NA coding downstream 468687 7651790 ~ 7652194 (+)
G110201 NA non-coding upstream 5646 7143267 ~ 7143659 (+)
G110167 NA non-coding upstream 211641 6937244 ~ 6937664 (+)
G110161 NA non-coding upstream 291307 6855880 ~ 6857998 (+)
G110147 NA non-coding upstream 353311 6795749 ~ 6795994 (+)
G110081 NA non-coding upstream 929219 6218531 ~ 6220086 (+)
G110240 NA non-coding downstream 56983 7240086 ~ 7240557 (+)
G110245 NA non-coding downstream 143927 7327030 ~ 7333170 (+)
G110243 NA non-coding downstream 410184 7593287 ~ 7633119 (+)
G110286 NA non-coding downstream 511451 7694554 ~ 7695513 (+)
G110361 NA non-coding downstream 730747 7913850 ~ 7914828 (+)
G110163 LOC100846954 other upstream 237051 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 560906 6519865 ~ 6588399 (+)
G110023 NA other upstream 1166396 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2014590 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 2042283 5094271 ~ 5107022 (+)
G110279 NA other downstream 470569 7653672 ~ 7655194 (+)
G110445 NA other downstream 992657 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 1527647 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 2380849 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4962642 12145745 ~ 12323278 (+)

Expression


Co-expression Network