AMCG00006515 (gnai1,LOC107386448,LOC108279833,LOC107590838,LOC100706147)


Basic Information

Item Value
gene id AMCG00006515
gene name gnai1,LOC107386448,LOC108279833,LOC107590838,LOC100706147
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7226133 ~ 7235139 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006515
ggTGCTGGGGAGTCGGGGAAAAGCACGATTGTGAAACAGATGAAAATCATCCACGAAGCTGGCTATTCAGAAGAGGAATGTAAACAATACAAAGCTGTTGTTTACAGCAACACCATTCAGTCTATAATTGCGATCATCAGAGCCATGGGGAGATTGAAGATAGACTTCGGTGACTCAGCCAGAGCGGATGATGCACGTCAGCTGTTCGTACTGGCAGGGTCTGCAGAAGAGGGCTTCATGACCTCGGAGCTCGCTGGGGTCATCAAGAGATTGTGGAAAGATGGCGGCGTCCAGGCCTGCTTCAACCGCTCCAGAGAATACCAGCTGAACGACTCTGCTGCATACTACCTGAATGACTTGGACAGGATAGCACAGAACACCTACATCCCCACCCAGCAGGACGTCCTCCGCACCCGAGTTAAGACGACTGGAATCGTGGAGACGCATTTCACATTCAAGGACCTGCATTTCAAGATGTTTGACGTGGGCGGTCAGAGATCGGAGAGAAAGAAGTGGATCCACTGCTTCGAGGGAGTCACGGCCATCATCTTCTGTGTGGCCCTCAGTGATTATGACCTTGTCTTGGCTGAAGATGAGGAAATGaaccGGATGCACGAAAGCATGAAACTGTTCGACAGTATCTGCAATAACAAGTGGTTCACTGACACCTCCATCATCCTCTTCCTCAACAAGAAGGATCTGTTCGAGGAGAAGATTAAAAAGAGCCCTCTGACCATCTGCTACCCTGAGTATGCAGGATCCAACACGTACGAGGAAGCGGCCGCCTACATCCAGTGTCAGTTTGAGGACCTGAACAAACGGAAAGACACCAAGGAGATCTACACCCACTTCACCTGTGCCACGGACACCAAGAATGTACAGTTCGTCTTCGATGCCGTCACGGATGTCATCATCAAGAACAACCTGAAGGACTGCGGCCTATTTTAAAGCTCCCGGACCTTGatTGGAAGATAATGACCCGGCTCAACACACGCATTTGTGGCGGAGAATAGGCCCAAAATGTGGAAAATTTCAATGATGGACCAGTACTGTACTATTTGCCAGTTTTAAgagctttatttatgtttttgtcttggaatattttaaaatagaatttaGGAAACATTTGTCTAGATTGTATGTATAATTGTAACTGTTGCAGcaactgtttttcacaaaaagGTCATTTTTTTTGAAGgatatttgaatttttttttttttttttgcttttttgcctCTTGTCAAAGAAGGCTTTccttttgtggaaaaaaagttTCCCCCAGTCGTCGAAAAAGGGTTCGAGTGGTATCCAGTTTTTAGGCTTCTGTGCCTTCGCATGCCTTTTACTGTCCCtgttaaatgcttttgtttgcCTGCTCAGCTGTTCCCACACAAGTGTAAAGTTTCATGTTTAATATGACTTTGTTTTCACATTCCTTCCCAGCATTTCCCCCGATCTCCCTATGGCTCAGTTTGACTGAATTGATTATGTTTTGAGATTTCGTGTTGACTCACTTTTAAAACTCCAGTATATTCAGCGAGGCCTCAAAACGTCTCCGTGCACAGGTTTGTGATCCTGTTTTAGAGGCTTTTAAAACTACAGAAACGGTAAAGACATTGACAATGTGGGCGATTTTTAACTGGTTGGCAAGTGACTcaaatttgaatataaaattgtatttttattttaaagaatctAGTGGTCATTTCTTCTTGGTTGACGATGGAGCCTGCGTCCATCTTGTGTATACCTAAACCATGCCCTCGTGGAAGgcatcatttaaataaaggtatttgtgaccttgttttaaaaagaaaaacagccacAAATGTCATCCATTCTGATGAGAAACACATTCCATGTTTTGTACAGGAGAAGAGTAAGAGACCCATCTGTCTGGTGAAACTGTGGTATCCTACCACACGTCAGTTAGCACAGTGCTGTGGCGTATTGGATTTTAAAGACAATGTTTTGTCGATGAGATGTAATGTACTGTTAATGTGCATGATTTTAATTAGCTTTATGATCTACtctaatttcatttttactcCAGAAATGGTTGTACGATCCGATAAAACgcaatgtttatttacaaaatcaCAGATTCTATATGTGCCTTTGCTtgtggaatattttaattttcttttttgaacTTACAAATGATCATAAAGGAATGTTTCACAGCCTTGTTGGTCGGTTTTTTGGGATGGAGTGGCGGTGtcggcggccagccctgtgtgacggattttaaaatgtgtatagaTTGAACTACACCGAGGAAAACTCCCCCAATCAGCAGGGGGTTCTCGATTTAACCTGTACTTCTAGATAACCCTGAGCAAGTTAATAAAAATCCTGAAATCCTG

Function

symbol description
gnai1 Predicted to enable G protein-coupled serotonin receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be part of heterotrimeric G-protein complex. Is expressed in barbel; brain; gill; lip; and sensory system. Orthologous to human GNAI1 (G protein subunit alpha i1).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(i) subunit alpha-1

GO:

id name namespace
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031821 G protein-coupled serotonin receptor binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04630 GNAI; guanine nucleotide-binding protein G(i) subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006515 True 2367 mRNA 0.43 8 7226133 7235139

Neighbor

gene id symbol gene type direction distance location
AMCG00006509 NA coding upstream 43030 7149305 ~ 7183103 (+)
AMCG00006508 NA coding upstream 109376 7109344 ~ 7116757 (+)
AMCG00006511 NA coding upstream 167618 7057638 ~ 7058515 (+)
AMCG00006510 NA coding upstream 196673 7016819 ~ 7029460 (+)
AMCG00006505 NA coding upstream 432965 6786854 ~ 6793168 (+)
AMCG00006516 magi2,LOC107554949,LOC107574163,LOC107753655,LOC107661469 coding downstream 54865 7290004 ~ 7290669 (+)
AMCG00006517 magi2,magi2a,LOC107694149,LOC107755877 coding downstream 249005 7484144 ~ 7490138 (+)
AMCG00006518 NA coding downstream 306674 7541813 ~ 7577273 (+)
AMCG00006519 NA coding downstream 416651 7651790 ~ 7652194 (+)
AMCG00006521 NA coding downstream 525675 7760814 ~ 7782870 (+)
G110201 NA non-coding upstream 82474 7143267 ~ 7143659 (+)
G110167 NA non-coding upstream 288469 6937244 ~ 6937664 (+)
G110161 NA non-coding upstream 368135 6855880 ~ 6857998 (+)
G110147 NA non-coding upstream 430139 6795749 ~ 6795994 (+)
G110081 NA non-coding upstream 1006047 6218531 ~ 6220086 (+)
G110240 NA non-coding downstream 4947 7240086 ~ 7240557 (+)
G110245 NA non-coding downstream 91891 7327030 ~ 7333170 (+)
G110243 NA non-coding downstream 358148 7593287 ~ 7633119 (+)
G110286 NA non-coding downstream 459415 7694554 ~ 7695513 (+)
G110361 NA non-coding downstream 678711 7913850 ~ 7914828 (+)
G110163 LOC100846954 other upstream 313879 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 637734 6519865 ~ 6588399 (+)
G110023 NA other upstream 1243224 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2091418 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 2119111 5094271 ~ 5107022 (+)
G110279 NA other downstream 418533 7653672 ~ 7655194 (+)
G110445 NA other downstream 940621 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 1475611 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 2328813 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4910606 12145745 ~ 12323278 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024664 gnaia coding NC_007136.7 CM002909.2 20997671 ~ 21031007 (-)
grasscarp (Ctenopharyngodon idella) CI01000019_03458890_03473706 GNAI1.L, GNAI1 coding CI01000019 null 3458745 ~ 3473706 (-)