AMCG00006517 (magi2,magi2a,LOC107694149,LOC107755877)


Basic Information

Item Value
gene id AMCG00006517
gene name magi2,magi2a,LOC107694149,LOC107755877
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7484144 ~ 7490138 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006517
AACTATTACGGCACTCCCAAGCCGCCAGCTGAACCAACCCCCTTGCTGCTAAATGTAACAGACCAGATCCTGCCGGGTGCCAGACCCAGTGCCGAGGGGAAGAGGAAACGAAACAAATCCGTGAGCAACATGGAGAAAGCTGGCATAGACCCCCccgaggaagaagaggaggagaggcCCGTCGTAAATGGCAACGGCGTAGCAATAACTCCAGAGTCCAGCGAACACGAGGACAAAAGCACCGACGCTTCGGGCGAGATGCCCCCTCAGCCATACACGGCGCCCACCTACAGTCCAGCCGAGGGGGCGCCGGAGGAAGAGGAGCCGCCGAAGCCACCCATCAAGCCCGACGAGAACGATGAGTTGGGGCCGCTGCCGGACAACTGGGAGATGGCCTACACGGAGAAGGGAGAAGTCTATTTCATTGATCACAACACCAAGACGACATCATGGCTTGATCCCCGGCTTGCAAAGAAGGCGAAGCCCCCCGAAGAATGCAAAGAGGAT

Function

symbol description
magi2a Predicted to enable SMAD binding activity; signaling receptor binding activity; and signaling receptor complex adaptor activity. Acts upstream of or within pronephric glomerulus development. Predicted to be located in cell junction. Predicted to be active in cell-cell junction; cytoplasm; and dendrite. Is expressed in pronephric glomerulus. Human ortholog(s) of this gene implicated in nephrotic syndrome type 15. Orthologous to human MAGI2 (membrane associated guanylate kinase, WW and PDZ domain containing 2).
magi2 Enables beta-1 adrenergic receptor binding activity; phosphatase binding activity; and signaling receptor complex adaptor activity. Involved in negative regulation of protein kinase B signaling; positive regulation of phosphoprotein phosphatase activity; and positive regulation of receptor internalization. Located in several cellular components, including bicellular tight junction; nucleus; and plasma membrane. Implicated in nephrotic syndrome type 15.

NR:

description
PREDICTED: membrane-associated guanylate kinase, WW and PDZ domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006517 True 507 mRNA 0.58 3 7484144 7490138

Neighbor

gene id symbol gene type direction distance location
AMCG00006516 magi2,LOC107554949,LOC107574163,LOC107753655,LOC107661469 coding upstream 193475 7290004 ~ 7290669 (+)
AMCG00006515 gnai1,LOC107386448,LOC108279833,LOC107590838,LOC100706147 coding upstream 249005 7226133 ~ 7235139 (+)
AMCG00006509 NA coding upstream 301041 7149305 ~ 7183103 (+)
AMCG00006508 NA coding upstream 367387 7109344 ~ 7116757 (+)
AMCG00006511 NA coding upstream 425629 7057638 ~ 7058515 (+)
AMCG00006518 NA coding downstream 51675 7541813 ~ 7577273 (+)
AMCG00006519 NA coding downstream 161652 7651790 ~ 7652194 (+)
AMCG00006521 NA coding downstream 270676 7760814 ~ 7782870 (+)
AMCG00006525 LOC106596391,LOC107735413 coding downstream 317416 7807554 ~ 7812395 (+)
AMCG00006530 NA coding downstream 328534 7818672 ~ 7830030 (+)
G110245 NA non-coding upstream 150974 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 243587 7240086 ~ 7240557 (+)
G110201 NA non-coding upstream 340485 7143267 ~ 7143659 (+)
G110167 NA non-coding upstream 546480 6937244 ~ 6937664 (+)
G110161 NA non-coding upstream 626146 6855880 ~ 6857998 (+)
G110243 NA non-coding downstream 103149 7593287 ~ 7633119 (+)
G110286 NA non-coding downstream 204416 7694554 ~ 7695513 (+)
G110361 NA non-coding downstream 423712 7913850 ~ 7914828 (+)
G110429 NA non-coding downstream 597899 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 642957 8133095 ~ 8135492 (+)
G110163 LOC100846954 other upstream 571890 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 895745 6519865 ~ 6588399 (+)
G110023 NA other upstream 1501235 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2349429 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 2377122 5094271 ~ 5107022 (+)
G110279 NA other downstream 163534 7653672 ~ 7655194 (+)
G110445 NA other downstream 685622 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 1220612 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 2073814 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4655607 12145745 ~ 12323278 (+)

Expression


Co-expression Network