AMCG00006518


Basic Information

Item Value
gene id AMCG00006518
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7541813 ~ 7577273 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006518
ATGTGTTTGCAGGTGTTGGAGCAGTGGGATGTCCCAGGCAGCCCCCAGACGAGCTTATCTGCTCCCGTTATTCCACAGAATGTTCCCTTCCCAACAAACTTCCACAGGGCTTCTTTCCCAGACTCAGCCGATGGCTTTGATCAAAGAAAACCTGACCCCTATGAACTCTATGAGAAGTCCAGAGCTATCTATGAGAGTAGGCGACCGGATTACAGGGAGCTGGACGTTCACCTCCGAAGACAGAAGTCCGGATTCGGCTTCAGGATACTGGGAGGAGATGAGCCAGGACAGCCAATCTTAATTGGAGCAATAATCGAGAGGAGCTCGGCGGACAGGGACGGGAGGCTGCGGCCGGGCGACGAGCTCGTGTTGGTGGATGGGATCCCAGTGGCCGGGAAGACTCACAGATACGTCATTGACCTCATGCATGGTGCTGCGCGCAACGGACAGGTCAACCTCactgtgaaaagaaaagtgcaGGGGATGGGCGAGCCCTGCCCCGAGAATGGCCGAAGCCCTGGCTCGGTCTCCACTCAGCACAGCTCCCCCCGGAGCGACTTCACCGCCGCCCCGTTCGCCAACAACCCCACCACCAACAGCACGCAGCCCCCCGCCACCGGGACCTCGCCGCCCGAGGGCTTCGTGTCCCACAGCCTGCAGACCAACGACGTGGTCATCCACCGCAAGGAGAACGAGGGCTTCGGCTTCGTCATCATCAGCTCGCTGAACCGACCCGAGAGTGGGTCTACCATCACTGTGCCCCACAAAATTGGCCGGATAATCGAAGGCAGCCCGGCGGACCGCTGCGGGAAGTTGAAAGTGGGCGACCGGATCCTGGCGGTGAACGGCCAGTCCATCATTAACATGCCGCACGCCGACATCGTCAAACTCATCAAGGACGCCGGCCTCAGTGTGACTCTGCGCATCATCCCTCAGGAAGAGCTGAACAGCCCCGCCTCGGCCGCCAGCTCGGAGAAGCAGAGTCCCATGGCCCAGCAACACAGCCCCATGGCCCAGCAGAGCCCAGtagcccagcccagccctgcCGCCCAGCTCAGCCCTGTGGCCCAGGCGCCCGCTGCTCCTCCGCCACAGCTGCACGGCCACGACAGCAGGCAGGGTTCTTCATGTTGTATTCTTGTTAGCTACAGATCAGAGGTCAAAGCCAGGCAGGATGTGAAGCCCGACATCAGGCAGCCCCCTTTCACGGACTACAGGCAGCCCCCTGTCGACTACAGACATCCCCCCGTAGGAGATTACCGGCAGCCGCCCACGCTGGACTACAGACACCCACCGCTCCTCGACTACAGGCAGCACTCCCCCGACTCCCGGCAGTTTCCCATACCGGACTACAGGCAGCCGCAGGACTTCGACTATTTTACGGTCGAGCTGGAGAAGAGCATGAAAGGGTTCGGCTTCAGTATCCGCGGAGGCCGGGAGTATAAAATGGACCTGTTCGTGCTGAGGCTGGCAGAAGACGGGCCTGCGATCAGAAACGGGAGGATGAGGGTCGGAGATCAAATCATAGAAATCAACGGCGAGAGCACGAGAGACATGACACATGCCCGGGCCATCGAGCTCATCAAGTCCGGAGGCAGGAGGGTGCGGCTGCTTCTCAAGAGAGGGACAGGCCAGGTCCCCGAGTATGACAGCCCAACCCCCTGGGATGCTCCCCCTGCAGCCTCCCCAAGCCTGCCGGAAGTAGCCCCTTCCCTTGACACCATGACCATGCCATTGTCTTCATCTCATCCAGCCCTGCCCTCTGATCCCATTCACCTGCTCCCCCTGGAGCCAGCATGGGACACCAAGGGGGAGCGCAAGACCCCGCACAGGAGGGACGCATCCGCAGGGGGCAAGGAGAGCGGCCGAGCAGTGGACAGAGCCGAGCGCTCGCTGAGCCCCCAGAGAACGGACCCGCTGAGGCCTGGGCAGGCTCTGGGGAAACGGCCTGCGGAGCGGGGCGGGGGCGGCAGAACCGCCGGGGAGGGTGGCAGGTCCACCGCAGGGGGAAGCGGGGCGCAGGGGAAGGGGGCTCCAGGGGCTGCGGCCGCGGCGGAGCAGGACGCAGTCAGTGGAGCCACCCCTCGGAAGCAGGGGCAACCCAAGGCCCCCAAAGCTGCGCGAGGACGGTCCAAGGAGAGGATGGGGGAGAGGGCTGGCAccctggagaggagagagccGGATCAGTCTCTGAGAGGCCCCGGGGCAGACATGAACGGAGGGGCCCAGAGCAATGGCAACAACCCTGGGAGCCCCCCGGAGCCGGCCGCAGAGAAACCGGACAGGGAGCCGGCAAAGGTCACCCAGGGCACCAGCAGCGCAGCCAGGAAGTCCACCGTCTCGCCCGGGCCCTGGAAGATCCCGGGGTCCGACAAGCTGCCCAGCGCTCTGAAGTCGGGCACTTCCACTGTGAGCAGATAA

Function

GO: NA

KEGG:

id description
K05629 AIP1; atrophin-1 interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006518 True 2421 mRNA 0.63 10 7541813 7577273

Neighbor

gene id symbol gene type direction distance location
AMCG00006517 magi2,magi2a,LOC107694149,LOC107755877 coding upstream 51675 7484144 ~ 7490138 (+)
AMCG00006516 magi2,LOC107554949,LOC107574163,LOC107753655,LOC107661469 coding upstream 251144 7290004 ~ 7290669 (+)
AMCG00006515 gnai1,LOC107386448,LOC108279833,LOC107590838,LOC100706147 coding upstream 306674 7226133 ~ 7235139 (+)
AMCG00006509 NA coding upstream 358710 7149305 ~ 7183103 (+)
AMCG00006508 NA coding upstream 425056 7109344 ~ 7116757 (+)
AMCG00006519 NA coding downstream 74517 7651790 ~ 7652194 (+)
AMCG00006521 NA coding downstream 183541 7760814 ~ 7782870 (+)
AMCG00006525 LOC106596391,LOC107735413 coding downstream 230281 7807554 ~ 7812395 (+)
AMCG00006530 NA coding downstream 241399 7818672 ~ 7830030 (+)
AMCG00006528 NA coding downstream 269696 7846969 ~ 7858791 (+)
G110245 NA non-coding upstream 208643 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 301256 7240086 ~ 7240557 (+)
G110201 NA non-coding upstream 398154 7143267 ~ 7143659 (+)
G110167 NA non-coding upstream 604149 6937244 ~ 6937664 (+)
G110161 NA non-coding upstream 683815 6855880 ~ 6857998 (+)
G110243 NA non-coding downstream 16014 7593287 ~ 7633119 (+)
G110286 NA non-coding downstream 117281 7694554 ~ 7695513 (+)
G110361 NA non-coding downstream 336577 7913850 ~ 7914828 (+)
G110429 NA non-coding downstream 510764 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 555822 8133095 ~ 8135492 (+)
G110163 LOC100846954 other upstream 629559 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 953414 6519865 ~ 6588399 (+)
G110023 NA other upstream 1558904 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2407098 5127357 ~ 5134715 (+)
AMCG00006460 wasl,wasla,LOC107698525 other upstream 2434791 5094271 ~ 5107022 (+)
G110279 NA other downstream 76399 7653672 ~ 7655194 (+)
G110445 NA other downstream 598487 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 1133477 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1986679 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4568472 12145745 ~ 12323278 (+)

Expression


Co-expression Network