AMCG00006521


Basic Information

Item Value
gene id AMCG00006521
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7760814 ~ 7782870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006521
gtgtgtcgtgttcagagagacagtgtgtcgtgttcagagagacagtgtgtcgtgttcagagagagacagtccaCACAGGTAACTACAGCCGCCGCTGCCGGAGTACCGCCTAGTGTCTTACTTTAACCCCACCTGTGTCGGTGCCGTGGGGCGGACCGTGGCCGGGGATGTCCGTCTGACAGGGGGCTGTGCTGAGCTGTTCACACCCCGGGGGAGCCGTGCTGAAGGCCGCTCACATGTTGCATCTGCGCCCGACTCTTGATCTGCGGCGGGATGTGATGCCCCATGTCCTGAGGAAGGACGAGCCGCCCGGGACAGGAGAAGAGAGCCCACTGAGTGCTGCGGCGCTGCGGGTCGTCAACACGGAGCGGGACGGCAGGGTGCTGTACTGCTGCCAGGGCGCCTCTGGAAACACCAGCATAGGAAGATACGACCCTCGCATACAGCAAAACAAGCTGCTGTACACTTTTGACAAGGAGGTGTGTGTCAGCAGCGCCTCAGTAAACAGGGAGGCGACGCTGCTGGCTGTCAGCCTGGTGCAGAAGCTGAGGCGGGAGACGCACAGGGAGCCCCTCAGAGCAGGTTCAAAATGTTTGACCCTTCTCATCGAGATCCACCCAATAAACAATACGAAAGTCCTGAAAGCAGTTGACTGTCGCATAAGAGTGCAGtttttgtatCCGGACACGGACAAGAACTCTGTTCATGAGAGCCACTTGCTGCTCATTTCTGAAGACAGCTATGTTGAGCAGTTCCATATCAACTTGGTCCAAGAAGAAGGATACAGGGTGGTCATTCAAAACCCAGCCCGCATCCCTAAAGATAAAGTGGCAGAGGATTTCTCCTGGGCACAATGGGACGCACACACTCAGAGACTTTTCTACCTGACCTGCCGGgaAAAATCAGTGCTGAAATGTGTGCAGTTCTACCCTGACTGTATCTGTGAAACTCTGTTTGAGCTGCCTATGGATTTGCCTGCCAGCCCGTTTGCTCCCGTGAGGTTTGTTAACTTCGGTTGTGATCATTATAAAGACGAGGAGCTGGTGGCAGACGAGGCTCTGAATCTGGTTGTTCTCACAAGTAATACAGGAAGCATGTGCATTTGCTACAGTAAGCCAGTGCAAGCCGATGAAGACGTCACGTACACAGTTGCGTTTGTGCACAGAGGGTACAGCAAGACATTTACAGTCGCGATGGAAGGAGCGCCAAGACCCCCAAGAACGGACCTGCTTTTCATCAGCTTGGATTACTACATAGCGGTGTGTTTGCCTGGTTGCTTCCTGCATCTGATCAACTCCAGACAGCCGGACCTGGCGTGCCACAGCCTCTTCCTGTCAGTGGAGCTGCAGATCATACACTGGATATGTGACAATGTGATGAGCTACGACCGCTTTGATCAGATTCAGGAGTTCATGCTGACATCGTTGTACAGGAGGATTTGGCAGCAGTCTGTCAGTCTGGATAAGGTCCTGCCCTATTCCTCGATCTCTCACTGGGAAGAGACGAGGCATTTAAAGGGTTATTGGGAAGAGCTGCAGTGGAACATTGAGACCATGAAGTACTTTGAGGCGGTCCCGAATCTGAGATACAGGACCACCTTCGTCAGCGAAGAGTGGAATAAGCTATTGGCTGAAAGGGGCTCCGAAGAAAAGAAGCCATCCAACTACTTAAGAAACATCCAAGAGAACACCAAAAAGGTTTTGTCTACTGTGGACACCTGGCACTTAGATAAGAAGCTGGTCCCTCTCTTCCAGGAGGAGGATCACCAGCAGAGGGTGCTGATAGGCCTGATGGTGGACAAACTCAGGGAGCATCTGAACAGACACCTGCATCGCCTGGGCAAGAAGAGGATCGACGGGCTGGTGGTGAACTACGTGGCACAATTGCTGGAGCTGGTCAGACGCATCCTGGAGACGCTGTGGGTGAAGTTTAACCTCCGCTCTCAGCTGCTGTGTTTCAAACAGCAAGGCAGCCCTGCCGAGTGGGCTGTGTTTCATGTGATGAGCCGGGTCTTGGAAGCCGCTAAAGGTCTCTGCTTGCCCCTGCCTCCTGGTTTCAACTCCCTGCTGACGGTGCTGGGCCTGCGCTGCCTGCCCACTCACACCTTCCAGCAGTACCTGGACCATGGCATCCTGCAGCTCACCGAGCCCTTCGTCATGCAGCTGTTCAAAGAGCTGGACAACAGCGACCAGAACGAGGAGCTGAAGTTCAGCATCGTAAAGAGACTGCCAGAGtcTATGGGCCAGAAGATCTATCAGCTCTGGGATCACCCCATCAGCTCGGCCTGCATCGCCAGGAACTACGTTAGAAGCCTCTTTGTAAAGCTCGAGAAAAAGCAGGGGACGACCCGGGCAGAAAGGGACAGGTCTTTCTTCCAGTCCGAGTTCATGCCGCTCAGCTACTTGACCAAAACCCTTTACGACGAGCAGGAGAACGTGGATGCCAAGTTTGTTGAAGAAATCGCTCTGAAGCAGACTTTCCTCATGCTGGGCTTTGAGGACAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006521 True 2504 mRNA 0.54 30 7760814 7782870

Neighbor

gene id symbol gene type direction distance location
AMCG00006519 NA coding upstream 108620 7651790 ~ 7652194 (+)
AMCG00006518 NA coding upstream 183541 7541813 ~ 7577273 (+)
AMCG00006517 magi2,magi2a,LOC107694149,LOC107755877 coding upstream 270676 7484144 ~ 7490138 (+)
AMCG00006516 magi2,LOC107554949,LOC107574163,LOC107753655,LOC107661469 coding upstream 470145 7290004 ~ 7290669 (+)
AMCG00006515 gnai1,LOC107386448,LOC108279833,LOC107590838,LOC100706147 coding upstream 525675 7226133 ~ 7235139 (+)
AMCG00006525 LOC106596391,LOC107735413 coding downstream 24684 7807554 ~ 7812395 (+)
AMCG00006530 NA coding downstream 35802 7818672 ~ 7830030 (+)
AMCG00006528 NA coding downstream 64099 7846969 ~ 7858791 (+)
AMCG00006532 NA coding downstream 90204 7873074 ~ 7877171 (+)
AMCG00006534 pmpcb,LOC106576546 coding downstream 113317 7896187 ~ 7899991 (+)
G110286 NA non-coding upstream 65301 7694554 ~ 7695513 (+)
G110243 NA non-coding upstream 127695 7593287 ~ 7633119 (+)
G110245 NA non-coding upstream 427644 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 520257 7240086 ~ 7240557 (+)
G110201 NA non-coding upstream 617155 7143267 ~ 7143659 (+)
G110361 NA non-coding downstream 130980 7913850 ~ 7914828 (+)
G110429 NA non-coding downstream 305167 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 350225 8133095 ~ 8135492 (+)
G110444 NA non-coding downstream 390458 8173328 ~ 8175573 (+)
G110446 NA non-coding downstream 395651 8178521 ~ 8178728 (+)
G110279 NA other upstream 105620 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 848560 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1172415 6519865 ~ 6588399 (+)
G110023 NA other upstream 1777905 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2626099 5127357 ~ 5134715 (+)
G110445 NA other downstream 392890 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 927880 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1781082 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4362875 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4837192 12620062 ~ 12651815 (+)

Expression


Co-expression Network