AMCG00006522 (rsbn1l,LOC108279531,LOC107569939,LOC106561326)


Basic Information

Item Value
gene id AMCG00006522
gene name rsbn1l,LOC108279531,LOC107569939,LOC106561326
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7655852 ~ 7666518 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006522
ATGGATTTCCTGCAGGCCGCTATTAACACGTGGAAATGTAAAACGGAGCTACAGGGCCCTAATCTCATCACTGTGGTTATGGCTGAATCCAGAAAACAATTTCAGAGAACCCTGGTCTTATCAGTCACTACTAGCAGACTGGCTCTTGGAGCAGCGCTTCGGGCGGGCGGCTCTGGAGACCAGCAGCTGCTCTTTACCTCGCTGTCCTCTCGGTTTCCGCCCACGCCTGATGAACTTGATAACGCTCTTAAATGGTATGGGTGGCCTCCTTCCAAGCTGGCATTGCGTGCCATTCGGTGTCGAATCTTGTGTAACTCGGGTCTAACGGTAAAAAGGACCTACTGCCATGGGACATACCGGGCCGGCGCCATGCGGCAGATCAGTCTGGTGGGAGCGGTGGACGAAGAGGTCGGAGATTTCTTCCCAGAATTCCTCAGCATGTTGGAAGATTCACCTTTTTTGAAACGTACACTGCCGTGGGGGACGTTTTCCAGTCTTGACCTGAAGAGCCCGACGGAGAGCGACGACGGGCCCATCATGTGGGTACGGCCCGGGGAGCAGATGATTCCGGTAGCAGACATGCCAAAGTCACCCTTCAAAAGGAAAAGGACTACCAATGAAATCAAAAACCTGCAGTACCTACCTCGGGCCAGCGAGCCCCGCGAGATGCTGTTCGAGGACCGGACGCGGGCCCACGCTGACCACATCGGCCAGGGCTTTGAGCGCCAGACAACGGCGGCGGTGGGGGTGCTGAAGGCGGTGCACTGCGGAGAGTGTGCGGACCCCCCTCGAATAACCAAAGACGTTATTTGCTTTCACGCTGGAGATTTCCTGGAAGTGGTGCAGAGACTACAGCTGGACCTGCACGAGCCGCCCCTCTCCCAGTGCGTGCAGTGGGTGGACGACGCCAAGCTCAACCAGCTCCGGCGTGAGGGGATCCGCTACGCCCGCATCCAGCTGTACGACAATGACATTTACTTCATCCCCCGCAACGTGGTGCACCAGTTCAAGACCGTGTCCTCCGTGTGCAGCCTGGCCTGGCACATACGCTTGAAACAGTACCACCAGGAGGCGGCGGCGGCGCCCGGTCGCCCCCACGAGGCCGAGGCGGAGTCCGGACCCCCTCCGCCGGTCAAGCCGGAGCCCGTTGAGACACCGGCACACGGACTCTCGCTAGACTCGAAGCCCCCCCGAGAGGGCAGGGAGCCGAGAGACGCCCTCCTCCCGGAGATCAAGGCGGAGCCGCGGGACGTCCATGTGGAGAGGGTGGCCAAGGCGCCCCCTCCGCCCGAGAGCAGGGccaagccccccccccaccaccaccaccaacaccaccacTCTGAATGTCGGACCACTCCGGGCAAGACGCTGCCCCAGACCCCCCTGCCCCGGAGCGAGAGGTCGAAGGACACCGtgcgcccccccgcccccgtcACCCCCGAAGACACGCGGCCGTCACTCAAACACCACCTGCATGAGCAGCAGAAAGACTTTTTATACTGA

Function

symbol description
rsbn1l Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to be active in nucleus.

NR:

description
PREDICTED: round spermatid basic protein 1-like protein

GO: NA

KEGG:

id description
K22610 RSBN1, KDM9; lysine-specific demethylase 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006522 True 1503 mRNA 0.61 8 7655852 7666518

Neighbor

gene id symbol gene type direction distance location
AMCG00006520 phtf2 coding downstream 34803 7593287 ~ 7621049 (-)
AMCG00006514 NA coding downstream 460348 7186687 ~ 7195504 (-)
AMCG00006512 NA coding downstream 549076 7098583 ~ 7106776 (-)
AMCG00006513 NA coding downstream 566727 7078320 ~ 7089125 (-)
AMCG00006507 NA coding downstream 650979 6997547 ~ 7004873 (-)
AMCG00006524 NA coding upstream 1102 7667620 ~ 7688311 (-)
AMCG00006523 NA coding upstream 28022 7694540 ~ 7718823 (-)
AMCG00006526 NA coding upstream 117502 7784020 ~ 7801047 (-)
AMCG00006527 NA coding upstream 163434 7829952 ~ 7848529 (-)
AMCG00006536 NA coding upstream 213616 7880134 ~ 7887109 (-)
G110271 NA non-coding downstream 87693 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 88285 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 97384 7558205 ~ 7558468 (-)
G110267 NA non-coding downstream 104745 7550859 ~ 7551107 (-)
G110263 NA non-coding downstream 133470 7521561 ~ 7522382 (-)
G110309 NA non-coding upstream 90107 7756625 ~ 7756852 (-)
G110369 psmc2 non-coding upstream 241040 7907558 ~ 7909228 (-)
G110576 NA non-coding upstream 1343622 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1809964 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2638413 10304931 ~ 10305247 (-)
G110195 NA other downstream 548714 7078389 ~ 7107138 (-)
G110140 NA other downstream 870001 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 1612928 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2052119 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3378697 4270416 ~ 4277155 (-)
G110507 NA other upstream 1055870 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 1117387 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 1331119 8997637 ~ 8999264 (-)
G110605 NA other upstream 1878977 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 2420757 10087275 ~ 10107285 (-)

Expression


Co-expression Network