AMCG00006525 (LOC106596391,LOC107735413)


Basic Information

Item Value
gene id AMCG00006525
gene name LOC106596391,LOC107735413
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7807554 ~ 7812395 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006525
CCTCAAACTGCTCGCACTGCTCTCCCTGCCTGATATTAATGAGACAGCTATAAAAGTAGGTGGCAGCTCTTTAAGCTAGTTTCTGCAAGAGGCAAACAGCGAGCTCTAGCATTTGACAGCGACATGAAGctcgtctctctctgtgtgttcgGCGCTGTGCTGCTGGCCGGGGCAGGGAGCAGTGCGGAAACAGATGAGGGATCTCCCAAGGAAGGGAAGGGCAGCTGCTCTGTGCGGCTCAGACCCAGCGGGCACTGTGGGGAGGACGACGAGTGCCCGTACCAGGTCACCCTGCCGCCCCTCACCATCCAGCTGCCCAAGCAGTTCAGGATGCTGGAGAAGACCATGAAGGAGCTGCAGAGCCTCAAGGCGACTGTGAACAAGCTCAAGAGCGCCTGTCTGGAGTGCAAGCAGCAGGGCGACCAGATCCCGCAGAAAGACAGCAGCGAGGCGCCGGGCATGGAACCAGCCAGCAATGACGAGGGCAGCAAAGCCCAGCAAAGCACCAACATCCACGAGCTGCAGACCAAGATGAACAAGATGTCCATCAGTCTGAAGAATGCCAGGAACCAGATCAACAGCCTGCAGGGACGCTTCGAGGAGCTCAACCTGCTCAACATGAAGAACGTGGAGGCTATGGTCAACAACAAGGTAGAGAACCTGACTGGAGTCGTTGACGGACTAAACAACAAGTGCTCCAGTCAGTGCGCGATGCAGACCTCACCGCAGTTCATAATAGCACCCAGAGACTGCTCCGACTACAATATGCTGGAAGAGAAGAAGAACGGCGTCTACAAAATCACTCCTGATCCCAAGAATGGCACCTTTGAAGTGTTCTGCGACATGGAGTCTTACGGAGGGGGCTGGACCGTGCTGCAGTACCGCCACAACGGCAGCGTCAGCTTCAACCGCACCTGGGCCGAGTATAAAAAGGGGTTCGGCAACGTGCACGGGGAGTTCTGGCTGGGCAACGACCGCATTCACCTGCTGACCAAAGCCAAGGACATGACCTTGCGCATCGAGCTAGAGGATTTCGAGGGCATGCGCGAGTACGCCAAGTACGAGCAGTTCTACGTCTCCAACGAGTTCCTGCGCTACCGCCTGTCCCTCAGCGGCTACTCCGGCACAGCAGGCGACGCCATGCACTTCAGCAAGCACTATAACCATGACCAGAAGTTCTTCACCACCCCAGACAAGGACAACGACATGTACCCGTCGGGGAACTGCGGGGCCTACTACGGCTCCGGCTGGTGGTTTGACGCCTGCATGTCCGCCAATCTGAACGGCAAGTATTACAACAAGAAATACAAGGGAGTCCGCAATGGCATCTTCTGGGGAACATGGCACAGTGTGTCCGACGAACACCCGACCAGCTACAGACAGGCTTTTAAAATGGTCAAAATGATGATCAGACCAAAAAACTATGCTCCGTAAGCCAGTGAATGCTCAGCTGTTGCTGTCAGACTATGAGgttcaataaacaaatgaaaatccCTAGCATCAGAAGATACAGTAAAGCTATGTTATAAAGCTGGATTGTggaagtaaatacatttaattccgATCTTAAAACTATGTGAATCATGAATTCGGTGTTAACAGATGAATGTGTCGAACAGAACTTTTCCTGAAATAGACTTTCTAACCACTTATGTCTGAGTGAAAATGAGACTATTGTGATTCAgtctcacaaaaaaaaatggtgtaaCCATAGCACATACGAAGCAAAAAACTCCAGCAAAGAATGTTGTTTACTGGGACCAACATAAAAGATCAAAGATAAAGAATAATGGTTAATGATATGCTTCACCTAATACACATGTtgagaatttattttcttatgtaatTTAAACTTGTTGCTTGCCGAAAACCATTAAAGCTGGCCATTAACCTCTGAAAATGCTAAACGCAAACAAGAATACAA

Function

NR:

description
PREDICTED: fibroleukin-like, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006525 True 1924 mRNA 0.50 2 7807554 7812395

Neighbor

gene id symbol gene type direction distance location
AMCG00006521 NA coding upstream 24684 7760814 ~ 7782870 (+)
AMCG00006519 NA coding upstream 155360 7651790 ~ 7652194 (+)
AMCG00006518 NA coding upstream 230281 7541813 ~ 7577273 (+)
AMCG00006517 magi2,magi2a,LOC107694149,LOC107755877 coding upstream 317416 7484144 ~ 7490138 (+)
AMCG00006516 magi2,LOC107554949,LOC107574163,LOC107753655,LOC107661469 coding upstream 516885 7290004 ~ 7290669 (+)
AMCG00006530 NA coding downstream 6277 7818672 ~ 7830030 (+)
AMCG00006528 NA coding downstream 34574 7846969 ~ 7858791 (+)
AMCG00006532 NA coding downstream 60679 7873074 ~ 7877171 (+)
AMCG00006534 pmpcb,LOC106576546 coding downstream 83792 7896187 ~ 7899991 (+)
AMCG00006535 psmc2 coding downstream 95299 7907694 ~ 7911362 (+)
G110286 NA non-coding upstream 112041 7694554 ~ 7695513 (+)
G110243 NA non-coding upstream 174435 7593287 ~ 7633119 (+)
G110245 NA non-coding upstream 474384 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 566997 7240086 ~ 7240557 (+)
G110201 NA non-coding upstream 663895 7143267 ~ 7143659 (+)
G110361 NA non-coding downstream 101455 7913850 ~ 7914828 (+)
G110429 NA non-coding downstream 275642 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 320700 8133095 ~ 8135492 (+)
G110444 NA non-coding downstream 360933 8173328 ~ 8175573 (+)
G110446 NA non-coding downstream 366126 8178521 ~ 8178728 (+)
G110279 NA other upstream 152360 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 895300 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1219155 6519865 ~ 6588399 (+)
G110023 NA other upstream 1824645 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2672839 5127357 ~ 5134715 (+)
G110445 NA other downstream 363365 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 898355 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1751557 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4333350 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4807667 12620062 ~ 12651815 (+)

Expression


Co-expression Network