AMCG00006531


Basic Information

Item Value
gene id AMCG00006531
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7936383 ~ 7950980 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006531
GGAAGCGATCAATCAGGAGGGGTGCATGTAGGATGAGGGACGTGATCTCACGCCTCTGCCTTCATCGTTTTACTTATTCTGTTCTTCAGCCTGTCTGTCCAAAAGGGGAGTAATAGTGGCAGTGAAAACGGGCTCTCTCACCAAGGATCATTGCACCTTGAGGAAGCATCTGAATCTGCAGCTGACTGTCATATCTGTCTGCTTTAGATCATGGCAAGGAGAAACATGACCGAGTTCGATGAGGATTTCACTTTTGTCAGCCCCGTGGtgaaatatttgctttttattttcaacatgatATTTTGGATGATCTCACTGGTGATGATTTCAATTGGCATTTATGCCAGACTAATGAAGCATGCAGAAACGGCGATGGCCTGTCTGGCTGTGGACCCCGCCATCCTGCTGATGGTGATAGGGGTGTTAATGTTCCTGATCACTTTCTGTGGCTGCATCGGGTCCCTGCGAGAGAACATCTGCCTCCTTCAGATGTTTTGCGTCTGCCTGACTATAATCTTCCTGCTGCAGCTGGCGGCTGGAGTCCTGGGGTTTGTCTTCTCTGATAAGGCACGGGGGAAAGTGAGTGAGATTATCAACAATGCTATTATTCATTACAGGGATGACCTGGACCTGCAAAACCTTATTGATTTTGGTCAGAAAGAGGGGATGCAGGACTTGGACTACGTGAGGGCCGGCGCGTTCATCAACACCAACGGCTGCATCGATAAACTGGTCAACTGGATCCATGAAAACCTCTTCTTGCTGGGGGGCATCGCTCTGGGGCTCGCCATCCCACAGCTGGTGGGGATCCTCCTGTCTCAGATCCTTATTAACCAGATCAAAGACCAGATCGAGCTGCAGAAGTACAACCTGCAGCACCGCTCGGACCCCTGGCGCTGACGCCGCTGAGGAGCCACGTGGCGACACGCAGGCACTGGCCCTGGGGACCGCTGCTCCTCTGTTGACTATTGTAGGTATTTCATCGAGGACAAGATTTTAACTTTTCAGGAGATGGTCTGAGTGCTGAGGGATGCGTCAAGATGGATTCTTGGTCACCCTGTTTTTTTCAAGCGATGTCACAAACGGTGGTGAAGGACGACCTCTGAGTGCGATCAAAGCCGCGTGTCACACACAACGCAGACACCGGTGGCTGGCAGTATGCTGTGTAAGGTCGAGCTCCAGAGATCGACAGAAGCTGGGAGTTCCCCACAAAGCCATCCGGCTTCCGGGGAATTCTGTCCCCTGCCTGATCCGAGACGCTATCCAAGAGTCGCATTAAAGCACTGGACAATAACTAACATAGAGGGAAAACGGACACTGCATCCCAGCAcctggaaagaaaaggaaaaaataaattgaccaCTCTGATCAGGGgatcaaaattaataattcttATATCAAACTCATCATTCTAACATTGGTGTAAATAAACTGATGGAAGACAACAGGTGGAAACTGAATACAAAGGACAATAATCTCACTAAACCTTTACACTAACGCATATTAAAGTGTCTGTTGTTCTGGATCCACATGTAAAGTTTGGTGTGAAGAGTGGGCGGCTCCTCTGTGCATATTCCCAGCATCCCTCAGACACTGCCCTTCCTTGCACACGTGTCTCAAGTGCCTAAATAGAATGAAAGTGTATAATGCACAACAAATCAAAAGTGCTGTCTGGTAGTCCTTGCATCACTGCTTTAGAATATGTTGCCTACTCTTCTcaacatgattattatatatatttgactttgCCTATTATGtagatattttgtattacattttatctaTTACCGTTTAATGCTACTTTAGATGAGTTCTGTGCGTGAAGCAGTTCCCCGAGGTATCCTGGACACCCGTGgctatttattttagatcactTAGTTCAGTGCTGCATTTTTAAccacattatttataataatgtagcTAATGTCCATTTCTCTAGAATGTACAGCTATGGTGCCTTTGCCAGCTCTGGACAAAAGCGGTTTATTTAATTGAgctaaattatcattttttttatgtatcctGATCTTGCCATTTGTTATACTGGCAACCTGCATATTGTAATTATAgggaatatattacattaacGCACTATTTGCTAATTACTGAGGCCTCACCCCAATCAAAACTGCCCTGGGTGCAAATTTCAAATTGCAAACCCAATCACAGTGTAATTTATTGTAAGCAGCCATTTTCTACTGCTTAATATAAACTCGAGGGTACAAGCTGTAATTTGAGATCTGCAGGTAGGCCAATGTTATGATCTGGGCTGagactaaaattaaaataatgtttttgtgttgctgGAGCTCTGTGtcttattttgttgtctgtaaatagaaatgtatttccGATGTGTCTTTCAGGCAGATCATATGGCTGAATGGTCTGTCTTTTTCTTGGAGGTCTAGAGCAGTCGTGTTACTGCTTCTACAGTTTTATGTGCTAATATAATgttcatgataataataagtgtttttattctgtccaaatgtattttccaataAAGCACGACATCATGATAGCAGTTTTGGAGTTGGAAGTAGATGGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17346 TSPAN33; tetraspanin-33

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006531 True 2551 mRNA 0.44 7 7936383 7950980

Neighbor

gene id symbol gene type direction distance location
AMCG00006535 psmc2 coding upstream 25021 7907694 ~ 7911362 (+)
AMCG00006534 pmpcb,LOC106576546 coding upstream 36392 7896187 ~ 7899991 (+)
AMCG00006532 NA coding upstream 59212 7873074 ~ 7877171 (+)
AMCG00006528 NA coding upstream 77592 7846969 ~ 7858791 (+)
AMCG00006530 NA coding upstream 106353 7818672 ~ 7830030 (+)
AMCG00006529 smo,LOC106609777,LOC104956154 coding downstream 4046 7955026 ~ 7966534 (+)
AMCG00006533 NA coding downstream 17011 7967991 ~ 7981094 (+)
AMCG00006539 NA coding downstream 42951 7993931 ~ 8000522 (+)
AMCG00006540 ube2h,LOC105888480,LOC107676921 coding downstream 75710 8026690 ~ 8034832 (+)
AMCG00006546 NA coding downstream 271901 8222881 ~ 8244037 (+)
G110361 NA non-coding upstream 21555 7913850 ~ 7914828 (+)
G110286 NA non-coding upstream 240870 7694554 ~ 7695513 (+)
G110243 NA non-coding upstream 303264 7593287 ~ 7633119 (+)
G110245 NA non-coding upstream 603213 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 695826 7240086 ~ 7240557 (+)
G110429 NA non-coding downstream 137057 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 182115 8133095 ~ 8135492 (+)
G110444 NA non-coding downstream 222348 8173328 ~ 8175573 (+)
G110446 NA non-coding downstream 227541 8178521 ~ 8178728 (+)
G110447 NA non-coding downstream 228461 8179441 ~ 8179688 (+)
G110279 NA other upstream 281189 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1024129 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1347984 6519865 ~ 6588399 (+)
G110023 NA other upstream 1953474 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2801668 5127357 ~ 5134715 (+)
G110445 NA other downstream 224780 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 759770 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1612972 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4194765 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4669082 12620062 ~ 12651815 (+)

Expression


Co-expression Network