AMCG00006533


Basic Information

Item Value
gene id AMCG00006533
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7967991 ~ 7981094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006533
CAGGGATGTCACTAGACACGGACTGCAGTCGCAGGCGGAGAAACACGCACGATGCTTTCGAGTTCCCCCAGGACTTGGATCACAGAGCGGAGCCGCAGCACAGACGAAGCTCCCTGTGTGACCGGCTGTGCATATCCAGCCATCACTCGGAGCTCACCGACATCTACTCCCCCGGGAACTCGCACCAGTTCAACGTCTTCACCCCGAGATACATGGCAGGCCAGGGAGtaCAGTCAGTCACTCCGACTAAGTGCCTGCACCGCTCCGGGGAGGTGCAAGGATGCGACGGCTGTGCCATCAAGACCACTCTCACTGCGGAGAACGAAGTGGAGGCTCACCGGCTCGCCAACAACTACAGGtttggatTTAAGAAATGGAAGAGCCATGTCACAGAGAGACCCTGGGAGGACAGATCAGAGATTGGTCTTTGTGTTCTGATGTTTGTGACTGTTATTGGAGCTCCATAtgGTAAGCTCTGTTGGAAATTGGCTTGTTATTTTCTGTGGCCATTTGGCAAGTCAATACAGAAGGCAACCCATCCTCTCAGAAAGTGCTGCCTGAAATTCCCAGAGTGTGAGGCCATACCCGAGGTGGATGAAGTGAAGGAGACCTCCCCGCTGGTGCCGCCCCCGCAGCCTGCGCCAGCCAGGACCCCGGGGACAAGGTCTTGCAAGCCCCGCTACTGGTGCCGGGTCAGCACCTACGTCTGGCTCATCTTGGGGTACCCTGTCCTGTTCCTGACCCACGCCCTGGTCTGCTTCTTCTCCTGGACTCTGGTCTTCACCATTCCCGTGTCCAAGATGAACGCCAGAACCATCAGCATCATCCTGCTCATGCCCCCCGAACTAGTCCGTATAGAAAATCCAAAAAAGACAGAAGTGAGTTCAGAATCGGAGGTGATGCTGTGCTGTTACCGTGCCTTTAATTTCTACTACTACAAGTACACTGTCGACGGGATGAATGTGTTCGCCGTCAACCTGCTGCCTCTCGTCATCATCACGCTGGTGATTGGCTATGCAGACAAGGAGAACCGCTATGCCAGCTCCCCGGTGAAGTTCACCACCGCCATAGGCTCCATCATCCCCCTGTCCTACTTCATTGGCATGGCCATCGCCAGGGGCTTCCGGGAAGGCAACAAGTGCTACGAGGAGATCGTGAAGTCTGCGCTGACCGGGACGCTGCTGGGCTGCATCCTCTTAGTTCCGGGTGTCTGCATGATCATCGGGGGCTGTAAGCACCAGGAGCAGAGGTTTAACAGCCGCTCCGCCGGCGTCGGGTCAGCGCTGCTCTTCATCTCGGTGGGAGGTGTGTTTGCCCCAACGCTGTTCTCCAAGGCCTATGGGAACCTGGTTTGCCAGAATTGTTCCAACACAACTGAGAACGCCACTGGCTCCTTCACCTGCCACAACTGCCACTACGACCTGAGTGAAAATAATTACTCATTGTTTCACAGCCATATCGAGCCCCTGGTTTACTCTGTGTCAGTCCTGCTCCCTGCTGCCTACCTGATCGGCCTCATCTTCACTCTGAAGACCCATTCGCACATCTACGACATTCACATCAGTGACTGCCACGTCCCTGGTCACCAACACATCCCAGTGGTCCACTGGTCACGTTGGAGAGCCGTGATCATCCTCATCATGGCCACACTGCTGATGTCGGCCTGCGCTGACCTGACCACCCTGCACATCGAGCCCATCCTGTCCAACTCCCGGGTGTCTCAGTACTTCATTGGTGTCACTGTCCTGGCTATGATCCCAGAGATTCCAGAGATTGTCAATGGGATCCAGTTTGCCCTTCAGAATAACATCAGTCTGAGCTTCGAGGTCGGGAGCTCTATGGCCGTGCAGGTCTGCATGCTTCAGATCCCGGTCCTGATCCTCTTTAACGTCTTCTACGACGTGGGCTTTGTTCTGATCTTCAGTGACTTGCACCTGTGGGCCAGCATCTTCAGCGTCATCCTGGTCAACTACATCTTCATGGACGGCAAGTGTGACTACTTTCAGGGAACAGCTCTGGTAGTTGTGTACCTCATCCTCCTAGCCATGTACTTCTTTGCTCCCTCCCCTGCTGGCTGCTGAGAAGGAAGTGAAGAGAAACCGCCATCGACGTTGCTTTAGAAAGCGTTATAACTTTTGTTTACAcaagctatatatatttattgataactctttacatttaaaCGTGGGGATTGTTTGTGAATGGTTGTCAAGTTGAATACTAACCTCAGAGTTCGGTACATTATGCAAACGGCCAAGTCTCGGATAATGaaggcttttttttatattaatgttcaaATATTGATTAGGCTATTTTGGCATTTGTGGTAAATGGTTGTTTTTTACAACTTTATTCTCATAAAATGTGTGAATACGgtttatatctatttttaaaatgctgataATTGTCAGTGCAGATTTGTGCACAGTAATgatagcaaaataataaaataactttttgtatttagttcTTTATGCAGCAGTAATGTTTGACACGTGTTTAAGTCCACAAAATCAGGAGCGGTTTTTGGGTGTAGGATAGTTAAACGTATTCGAAGGGAACTGATTCGATGTTCGTGTTATCAAGCTCTGGCTCAGTGGTTACAGGTACTTTCTGAATTTTAACCTGTAGATAGAGATTTTTCACACTGtacaacaataaacacattcttAAAGGTG

Function

GO:

id name namespace
GO:0014032 neural crest cell development biological_process
GO:0006816 calcium ion transport biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07300 chaA, CAX; Ca2+:H+ antiporter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006533 True 2678 mRNA 0.50 21 7967991 7981094

Neighbor

gene id symbol gene type direction distance location
AMCG00006529 smo,LOC106609777,LOC104956154 coding upstream 1457 7955026 ~ 7966534 (+)
AMCG00006531 NA coding upstream 17011 7936383 ~ 7950980 (+)
AMCG00006535 psmc2 coding upstream 56629 7907694 ~ 7911362 (+)
AMCG00006534 pmpcb,LOC106576546 coding upstream 68000 7896187 ~ 7899991 (+)
AMCG00006532 NA coding upstream 90820 7873074 ~ 7877171 (+)
AMCG00006539 NA coding downstream 12837 7993931 ~ 8000522 (+)
AMCG00006540 ube2h,LOC105888480,LOC107676921 coding downstream 45596 8026690 ~ 8034832 (+)
AMCG00006546 NA coding downstream 241787 8222881 ~ 8244037 (+)
AMCG00006551 NA coding downstream 663148 8644242 ~ 8660293 (+)
AMCG00006558 gpr85,LOC106576049 coding downstream 746549 8727643 ~ 8728326 (+)
G110361 NA non-coding upstream 53163 7913850 ~ 7914828 (+)
G110286 NA non-coding upstream 272478 7694554 ~ 7695513 (+)
G110243 NA non-coding upstream 334872 7593287 ~ 7633119 (+)
G110245 NA non-coding upstream 634821 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 727434 7240086 ~ 7240557 (+)
G110429 NA non-coding downstream 106943 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 152001 8133095 ~ 8135492 (+)
G110444 NA non-coding downstream 192234 8173328 ~ 8175573 (+)
G110446 NA non-coding downstream 197427 8178521 ~ 8178728 (+)
G110447 NA non-coding downstream 198347 8179441 ~ 8179688 (+)
G110279 NA other upstream 312797 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1055737 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1379592 6519865 ~ 6588399 (+)
G110023 NA other upstream 1985082 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2833276 5127357 ~ 5134715 (+)
G110445 NA other downstream 194666 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 729656 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1582858 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4164651 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4638968 12620062 ~ 12651815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027220 cax1 coding NC_007115.7 CM002888.2 14981854 ~ 14990926 (+)