AMCG00006534 (pmpcb,LOC106576546)


Basic Information

Item Value
gene id AMCG00006534
gene name pmpcb,LOC106576546
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7896187 ~ 7899991 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006534
ATGGCGGCGTCCTTGCAGCGTTTCGGCTTTGGTGGGATAGGATTgattagaaattattttttaaagacgcGTACCTTAATCAAGCCTGTTGTTGGGTTTAAGCGACACCGAGCCACACAGGCTGCCAGTCAGGTCCTTCTCAATGTACCTGAAACCAAAGTTACCGCACTTGAAAATGGACTCCGGGTGGCATCGGAGGACTCTGGGCTCTCAACGTGTACTGTTGGGCTTTGGATAGACGCAGGCAGCCGgtatgaaaatgaaaggaacAACGGAACAGCTCACTTTTTGGAACACATGGCTTTTAAGGGTACAAAGAAGCGCTCCCAGCTAGACCTCGAGCTGGAAATTGAAAACATGGGGGCTCATCTAAATGCATACACATCCAGAGAGCAAACTGTCTACTACGCCAAAGCATTTTCCAAGGATCTTCCCAGAGCTGTTGAAATCCTCGCCGACATCATCCAGAACAGCACCCTAGGAGAGTCCGAGATCGAAAGGGAGCGAGGGGTCATCCTCCGGGAGATGCAGGAAGTGGAGACCAACCTGCAGGAGGTGGTCTTTGACTATCTTCACGCCACGGCTTACCAAGACACCGCTCTAGGCCGGACCATCCTGGGGCCCACCGAGAACATCAAGACAATAAACCGCAATGACCTGGTGGAATACATCACTACTCACTATAAAGGTCCCAGGATCGTACTGGCAGCTGCTGGAGGAGTCTCCCACCATCAACTGATTGACCTGGCAAAGTACCACTTTGGTAATTTACTCTCCAGTTACAAAGGGGAGGCTCCAGCGTTGCCCCCATGCAGGTTCACAGGCAGTGAGATCCGCGTGCGAGACGACAAGATGCCCTTGGCCCACATTGCCATCGCTGTGGAGGCTGTAGGCTGGTCCCACCCTGACACCATCCCTCTCATGGTGGCTAACACGCTCATCGGAAACTGGGACCGTTCCTTCGGCGGGGGAGTGAATCTGTCCAGCAAGTTGGCGCAGATGGCGTGCCAGGGCAACCTGTGCCACAGCTTCCAGTCCTTCAACACCTGCTACACGGACACCGGCCTGTGGGGCCTCTACATGGTCTGCGAGCCGAACACCATCGAGGACATGATGCACTTCACTCAGAAAGAGTGGATGTCCCTGTGCACGAGTGTTTCCGAGAGCGAGGTCACACGAGCCAAGAACCTCCTGAAGACCAACATGTTGCTCCATCTGGACGGCTCGACCCCGATCTGCGAGGACATCGGCAGGCAGATGCTTTGCTACAGTCGTAGAATCCCCCTCCCTGAACTGGAGGCTAGAATTGATGCTATCGATGCCAAAACCATCAAGGATGTCTGTACGAAATACATCTATGACAAATGTCCTGCGATCGCTGCTGTT

Function

symbol description
pmpcb Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing involved in protein targeting to mitochondrion. Predicted to act upstream of or within proteolysis. Predicted to be part of mitochondrial processing peptidase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 6. Orthologous to human PMPCB (peptidase, mitochondrial processing subunit beta).

NR:

description
PREDICTED: mitochondrial-processing peptidase subunit beta

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K17732 PMPCB, MAS1; mitochondrial-processing peptidase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006534 True 1386 mRNA 0.53 12 7896187 7899991

Neighbor

gene id symbol gene type direction distance location
AMCG00006532 NA coding upstream 19016 7873074 ~ 7877171 (+)
AMCG00006528 NA coding upstream 37396 7846969 ~ 7858791 (+)
AMCG00006530 NA coding upstream 66157 7818672 ~ 7830030 (+)
AMCG00006525 LOC106596391,LOC107735413 coding upstream 83792 7807554 ~ 7812395 (+)
AMCG00006521 NA coding upstream 113317 7760814 ~ 7782870 (+)
AMCG00006535 psmc2 coding downstream 7703 7907694 ~ 7911362 (+)
AMCG00006531 NA coding downstream 36392 7936383 ~ 7950980 (+)
AMCG00006529 smo,LOC106609777,LOC104956154 coding downstream 55035 7955026 ~ 7966534 (+)
AMCG00006533 NA coding downstream 68000 7967991 ~ 7981094 (+)
AMCG00006539 NA coding downstream 93940 7993931 ~ 8000522 (+)
G110286 NA non-coding upstream 200674 7694554 ~ 7695513 (+)
G110243 NA non-coding upstream 263068 7593287 ~ 7633119 (+)
G110245 NA non-coding upstream 563017 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 655630 7240086 ~ 7240557 (+)
G110201 NA non-coding upstream 752528 7143267 ~ 7143659 (+)
G110361 NA non-coding downstream 13859 7913850 ~ 7914828 (+)
G110429 NA non-coding downstream 188046 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 233104 8133095 ~ 8135492 (+)
G110444 NA non-coding downstream 273337 8173328 ~ 8175573 (+)
G110446 NA non-coding downstream 278530 8178521 ~ 8178728 (+)
G110279 NA other upstream 240993 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 983933 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1307788 6519865 ~ 6588399 (+)
G110023 NA other upstream 1913278 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2761472 5127357 ~ 5134715 (+)
G110445 NA other downstream 275769 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 810759 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1663961 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4245754 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4720071 12620062 ~ 12651815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_03711890_03717941 PMPCB.L, PMPCB coding CI01000066 null 3711449 ~ 3717941 (-)