AMCG00006538


Basic Information

Item Value
gene id AMCG00006538
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7913423 ~ 7925635 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006538
ATGGAACATGTAACTGCCAACGGGGACCCTTCTGCGACATTAATGTACCATGTGGAGCGGCCCGTGTACAATGAGGGGTACATCGAGACACACCTGCTGCACAGGAAGGACAAAATACCTAAGAGTATTTGCAGTACACTGACGGAGCACGTTCGTTGCTCTTCCAAGAAAGCAAAATCCATTGTCTTCAGCTTCCTACCTATTCTGACATGGCTGCCCTCTTACCCAGTGAAAGAGTACTTGTTTGGCGATATCGTCTCCGGTCTGAGTACTGGAGTGATGCAGCTACCTCAAGGCTTGGCGTACGCAATGCTGGCAGCTGTACCCCCAGTGTACGGCCTCTATTCTTCGTTTTATCCCGTGCTGCTGTACACCTTCTTTGGGACCTCAAGACACATCTCTATAGGTACATTCGCCGTGATCAGCCTGATGATTGGCGGGGTGGTGGTGCGGGAGGCTCCGGACTCCGCCTTTGAGATCGCAGCTACCAACGGGAGCAACTCCTCCGTGATCTTCGACACCGATGCCCGCGACGCACGGAGGGTACAGGTGGCAGTGGCGCTCACCTTTCTAGTGGGCATCATACAGTTCTGCTTCGGCCTCCTGCGGTTCGGCTTCGTAGCCATCTACCTCACGGAGCCCCTGGTGCGCGGCTTCACCACTGCGGCTGCCGTTCACGTCTTCATCTCGCAGCTCAAGTACCTCCTGGGGGTCAGGACTTTGCGGTACAGCGGGTTTCTCTCTGCAATATACAGTTTAATCGAGGTGTGTAAGAATATCGCCACAACCAACGTCGCCACTCTTCTGGTGGGGCTGTTCTGTGTCGTCGTCTTGTTCGGGATAAAGGAGATCAATGACCGGTTTAAGAAGAAGCTGCCCGTACCAATCCCTGTGGAGATCATTGTGGTAATCATTACGACGGGCGCCTCGTACGGAATGCAGCTCCATGAGAAGTATGAGGTGGAGATCGTTGGGAAAATCCCAACAGGGCTCCTCCCACCAGTCGCTCCGGATTTCTCGATGATTAAGAATTTGATCCCGGATTCCATTGCTATCGCGGTGGTGGGCTTTTCGATGGCTGTGTCCATGGCCAAAATCTTTGCCCTGAAGCACGGCTACACTGTCAACGGCAACCAGGAGCTCATCGCGTTGGGGGTGTGTAATTTCACAGGGTCCTTTTTCCAGACGTTCTCAGTCACGTGCTCCATGTCTCGCAGCCTGGTCCAGGAGAGCACGGGGGGAATGACTCAGATCGCGGGACTGTTGTCCTCCCTGGTGGTGCTCCTCGTGGTTGTGGCGGTGGGCTTCGTCTTTCAGCCCCTACCTCAGACCACGCTGGCTGCCATTGTAATGGTGAACCTGATGGGGATGTTTAAGCAGTTCAGAGACATCCCTTCTCTCTGGAGGACCAGCAAGATTGAACTTGCAATCTGGGCGGTGGCTTTCATTGCATCTGTTCTGTTGGGCCTCGACTATGGACTGCTGGTGGCCGTTGGGTTTGCCATCCTCACTGTCATCTACAGAACCCAGAGCCCAAAGCATGCCATCCTCGGGCAGATCCCAGACACGGAGATGTACTGTGACATTGAAGAGTACGAGGAGGCGGTCGAATCTGTGGGGATTAAAATATTCCTGTCCAACAGCTCCATATACTTCGCCAACAGTGACCTTTACGTCAGTGCTCTGAAAGAGAAGACAGGAGTGAATCCGGCACAGTACCAGGCAGCATGGAAGGCCAgggagaagaaacagaagaaggACAAGGTGAAACAGGACTTCCCTCAGGAAAGAAAAGCTGTGGTTAAACTTATGCAGGACGCAGAGATGGGGGTGACACACGAGCTGGAGGATGGGAAGAGCATGGAGCTCCAGAGCAACGGCCAGCTCCCGGCGGCCAAGAGCGACTTGGACAGCGAGGAAACACGGCACTTCCTGGAGCCCCTGACGGACGTCCACTCCATTGTGCTGGACTTCACCCCCGTCAACTTCATCGACTCTGTTGGAGCCAAAGCCCTGAAATCAGTAATGAAGGAGTACAGTGAGATCGGTGTGTCCGTATTCATCGGGGGGTGCAGCAGGACTGTGCTGGCTGACCTGAGCCGAATGAGCTTCTTCAGCGGGGCGGTGAGCAGAGAGCTGCTGTTCCCCTCTGTCCACGACGCCGTGCTGCACTGCCGGCACCGAGCTCCTCTCCCCGGCCCCCCGGCAGCCACAGACGGTGCCGCGCGGACACCGGCAGAGGAGTGA

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0019532 oxalate transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019531 oxalate transmembrane transporter activity molecular_function
GO:0015301 anion molecular_function
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG:

id description
K14703 SLC26A5, PRES; solute carrier family 26, member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006538 True 2247 mRNA 0.55 18 7913423 7925635

Neighbor

gene id symbol gene type direction distance location
AMCG00006537 dnajc2 coding downstream 7223 7901616 ~ 7906200 (-)
AMCG00006536 NA coding downstream 26314 7880134 ~ 7887109 (-)
AMCG00006527 NA coding downstream 64894 7829952 ~ 7848529 (-)
AMCG00006526 NA coding downstream 112376 7784020 ~ 7801047 (-)
AMCG00006523 NA coding downstream 194600 7694540 ~ 7718823 (-)
AMCG00006542 klhdc10,LOC107587165,LOC107729855,LOC107690572 coding upstream 56449 7982084 ~ 7993911 (-)
AMCG00006541 nrf1,LOC107584621,LOC107690626 coding upstream 139441 8065076 ~ 8087619 (-)
AMCG00006544 NA coding upstream 162402 8088037 ~ 8090151 (-)
AMCG00006543 strip2 coding upstream 165049 8090684 ~ 8120577 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding upstream 203244 8128879 ~ 8137211 (-)
G110369 psmc2 non-coding downstream 4195 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 156571 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 345264 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 345856 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 354955 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 1084505 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1550847 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2379296 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 2495926 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2677460 10603095 ~ 10603733 (-)
G110195 NA other downstream 806285 7078389 ~ 7107138 (-)
G110140 NA other downstream 1127572 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 1870499 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2309690 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3636268 4270416 ~ 4277155 (-)
G110507 NA other upstream 796753 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 858270 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 1072002 8997637 ~ 8999264 (-)
G110605 NA other upstream 1619860 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 2161640 10087275 ~ 10107285 (-)

Expression


Co-expression Network