AMCG00006539


Basic Information

Item Value
gene id AMCG00006539
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7993931 ~ 8000522 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006539
AGGAGATGCGGAGACGGGTGACTGGGCagctgttattaaaaaaaaactttagcaCATCAAGATGATTGTTTGGACGGTGCAGAttaaacaacattaattaaaatatacgaaTTAAATTATAgctttcattaacattttaatgaatcagACACcgttttattatacattatgttaggtatttaaaaataattatatattttaaattatgtactGCTTATTTGTTGACTTTCGAAGCACAGATACCCTTTTAAAGCCCTTTTAATTGGCTGTACAAactttttgtgtaaaaaaacGAATTCACTTAATGGTAGAAATCGATatatctatttgtttttaatcgtCAATGTCGCTATtgatattaatgtgttttgcaTCGGGACGCTGTACTGTGACAAAGCGGGACCTTCTTCGCTTGGGTGCCGTTTCTCCAGCCGGGGACGACATAGAGTGCGGGACTGAAAATGGCGGCGCTCAATACCAGCGGGGATGGCGTTGATACCGCGGCGGAGAAATTAAAATCTCCTCAAGCAACTCTTCAGAGAGTCCGCGAAATACTCAGCCAGGGGATTGCGGTGGAAGACAGTCGGTGTGAGAGTGAGGAGCATGTGGCTGAACCAGAGACCCCAAATGATGTATCCCATGCTCCATTTCAGGCAGTGAGCAAAGAAGCCTTTTTCTCCCGGGTGGAGACGTGTGCGAGTTATGGCTGGACGAATGTAGCTTTTGACATGCTAAAGTGTACAAGCTGTGAGGCGTTCCTATGTGGATCTCTAGAGCTCAACCGagacattaataaatACAAAGAACGAATACTAGAGCTTAAGAAATCTTTACAAACACGCCATGACAAGTTTTGCTTCTGGCCAGACTTCCCCAGTCCAGATCGGTTCTGGACCCTCCCAATCAGCGAGCCAGCATCTCTAAGCGAGGATGTACTCAGTGTCCTGCTGCAGCTGATTGAAGACGAGCTGAAGAGAGAAGGAGGGTCTCCGGTGAAGATCTGTGCGGAGCCTCTGTCTGTGCAACTGACAGCCTGCATTGTGGCTCTGTTCGGCTGGTCCTCCAGTGCGACCCATAGCTCTCTGCACCTGCCCGTCCTCATCTGCTCCTACTGCCTGCGCAAGGTGGGCCTTTGGAACTTCCATCAGATCGACGGGCTGACCGTAGAGGGGGATGGCTCCTTTGCCTTGACCTCCACCCCGGGGCAGGACAGCCGTGGGGACCGGATGAACCCCACCTCCGCCTCGCCCTGCAGGATGGTGCTGCGGAGCCAGGACGCCACGCGGACACAGGGCTCTGAGCATGGTGATGCCAGCCCATCGCCGCTGGTTTTCCGGACTCGAAACCGGGACTCTCCCAGCCCCAATGAGGAGTCTCCCAGCCCCGTGTCCAGGGGAAAGAGGCCGGTGACGCGCAGCCGGGTGCTGGGCGAGGCCGTGCCGCCAGGCAGCGAGGTGCCCTCCAGCCCCCAGCGCAGGGCCAAGCGCTCGCGTCTCTCCTCCGCCAGCAGCACGgacacccccaccccccgcagTGCCTTTGACCCTTTGTACCAGCACCGAGACTGGTGTCCCTGGGTCAGCATGTCGCAGATTCAGACACCGGGGGAAGGGGAATCCACCACCGACACCCCTGCCCAGCCACAGGGCCCCGAGAGCAGCCAGCCGGGCTGGAAGGCAGCGCTCGACGTGTTCCTCTCCATGAGGAAATCGGACGAGTCCCAGGGGGCCACTTCATCACAGGGTCTCCATGACAAAACGCAGAGGGTCCTGAAACTCTTCCGAGTGTGTTTTCCCAACAAAGCCTCTCCGTGACACGGGACTCTGGTGACTGGCCTGGGTTTtacccctttttattttgccttttgtgGTCTTTCTACCTGGAGTTACAGACCTGCCATTGATACGAAGCCACGCCAGTTCTTGAGTCTTGTTTACCCTCAAATAATCAACTTCACCTttaactacaataaaaaaaaaaaaaaaaaacaacatccctGTGCCGTGCAGAGCGAGTGTCTTCCAGAGTCGCTCTGAAAAAGCCCGTTGACCTTCCTGTGATGGGGAAAGGGAGATGCAGGGCTCTGGACCTACACCGGGGGCTCCAGAACAAAGTTGGTTCATGCCCAAGAGACTGGCTGCTGACACCGATTGACTGCAGTAAGACAGCTGGCCTCATTCTGAGAGAGCCAGCCCTCCGTTACTCCTGGTGAGGACAGACTCGCTGTTAGGAGATATTATGGTCTGTACCACACTACTTGTGAGCAGCACTCCGTAACTGGGGAACACGTTCTTCTTTAtcccaaatgttaatgtttaactaCAGTAAATGCAGTTCAGTTACTTTGAAAGGGGATCATTGTATTTCTTCAAGGGAAATTAAAACGTTTAAAATATCATATGGGTCTTTCATTAGGGTTGGGGAGAACTGGACAACTATTTTAATGACTTAAAGATCTGTATGTGAACAGAATGTGTACAGTGCCATGGAAGGACTTTTTAGAAGGATTGTTTTGATGGTAAAAGTGGGGTGGGTGGGAAGACATTCctgatattgtacattttctgtgaatgcattgctttttttgCCTCTGGGTTTTAAGACTCAGCTGTAGCAGATGTTGAATTTTTGGATTCCATGTTCcgcacaaattaaaatgtttctcccTCGTAGTGGACACAAATGCCTTTGTATTGAAATATGAGAAATGAAAGCAGTGGTGCTGAGATTGCTGCCGTTTTCTTTTATTGCATTCTTGCCAGGAGGGACAGCCTGTGCAGACGTGATAAAATGtctcattaaatatttttctacatAAATATTGCAGTAATggaatgtatataaataatacattgttgaaTTAGGCCTGTTTGCTATGTTTGTTCCCATTATCTTGCATCCAttgctaaaaatatatttcagcatcATACCACAATCCTTCTGAAAGTGTCCTCAAGCCACTTTGAATCGGGcctttaaatgtttacatttaactTGTAATGAAGCTGCTAGCGacatttgtattaaaagcaGAAAGACCTTTCCTGTAAATGCACTATTGTCATTTATGTGTATAACACCTGAGACCTTCATACACTTATAATAGCTCTGCAATTCCATTATATTATTGCTTTcctaattcatttatttttccacccaAAGTGAAGCTTTAAACCACAGCTTGCTCTGAATGaattacacatatatacaaatattaatttatctttaaacATTTTGCGTTGGACATCAGAGATTTTGAAAATCATCCTGCTTTAACTCCCAGTTTATCTGGTAAGCCTACAGTGGCAGCAGTAACCGAGCCCAGGAATGCCCTTTCACCTAGTTCCTCAGAGGGTAAAcaatggggcttggaaaagcTGGTTACACGACGTTAAAAAAATAGTGTTCATTCTAGAGTCAGAGCTGCAAAGACATTCTAAAAGGCAAAATTTAAACCTGTCAATCTGCTTGAAGCCACTGGTGTCTTGTGTTTGCAA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006539 True 3497 mRNA 0.47 10 7993931 8000522

Neighbor

gene id symbol gene type direction distance location
AMCG00006533 NA coding upstream 12837 7967991 ~ 7981094 (+)
AMCG00006529 smo,LOC106609777,LOC104956154 coding upstream 27397 7955026 ~ 7966534 (+)
AMCG00006531 NA coding upstream 42951 7936383 ~ 7950980 (+)
AMCG00006535 psmc2 coding upstream 82569 7907694 ~ 7911362 (+)
AMCG00006534 pmpcb,LOC106576546 coding upstream 93940 7896187 ~ 7899991 (+)
AMCG00006540 ube2h,LOC105888480,LOC107676921 coding downstream 26168 8026690 ~ 8034832 (+)
AMCG00006546 NA coding downstream 222359 8222881 ~ 8244037 (+)
AMCG00006551 NA coding downstream 643720 8644242 ~ 8660293 (+)
AMCG00006558 gpr85,LOC106576049 coding downstream 727121 8727643 ~ 8728326 (+)
AMCG00006556 bmt2 coding downstream 746072 8746594 ~ 8794059 (+)
G110361 NA non-coding upstream 79103 7913850 ~ 7914828 (+)
G110286 NA non-coding upstream 298418 7694554 ~ 7695513 (+)
G110243 NA non-coding upstream 360812 7593287 ~ 7633119 (+)
G110245 NA non-coding upstream 660761 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 753374 7240086 ~ 7240557 (+)
G110429 NA non-coding downstream 87515 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 132573 8133095 ~ 8135492 (+)
G110444 NA non-coding downstream 172806 8173328 ~ 8175573 (+)
G110446 NA non-coding downstream 177999 8178521 ~ 8178728 (+)
G110447 NA non-coding downstream 178919 8179441 ~ 8179688 (+)
G110279 NA other upstream 338737 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1081677 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1405532 6519865 ~ 6588399 (+)
G110023 NA other upstream 2011022 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2859216 5127357 ~ 5134715 (+)
G110445 NA other downstream 175238 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 710228 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1563430 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4145223 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4619540 12620062 ~ 12651815 (+)

Expression


Co-expression Network