AMCG00006540 (ube2h,LOC105888480,LOC107676921)


Basic Information

Item Value
gene id AMCG00006540
gene name ube2h,LOC105888480,LOC107676921
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8026690 ~ 8034832 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006540
ATGGTGATTATGCCCAGATTCTGCTCGAACACACCGTACGAGGGGGGAGTGTGGAAGGTGCGAGTAGATCTACCCGACAAATACCCTTTTAAATCTCCATCTATAGgattcatgaataaaatatttcatcCCAACATCGATGAAGCGTCAGGAACTGTGTGTCTAGATGTAATTAACCAAACATGGACAGCCCTCTACGACCTTACCAACATATTTGAATCGTTCCTGCCTCAGCTGCTCGCCTATCCCAACCCCATCGACCCCCTGAACGGCGACGCCGCCGCCATGCCCTGCCTTGACTCCCTGGCCTGGGAGTTGTGCCTCCGAGAATACATCCAGAAATATGCAACAGAGGAGGCTTtgaaggagcaggaggagggTGCGGGGGACAGTTCGTCGGAGAGCTCAATGTCGGATTTTTCGGAAGACGAGGCACAGGATATGGAATTGTAG

Function

symbol description
ube2h Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Orthologous to human UBE2H (ubiquitin conjugating enzyme E2 H).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 H

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006540 True 453 mRNA 0.51 7 8026690 8034832

Neighbor

gene id symbol gene type direction distance location
AMCG00006539 NA coding upstream 26168 7993931 ~ 8000522 (+)
AMCG00006533 NA coding upstream 45596 7967991 ~ 7981094 (+)
AMCG00006529 smo,LOC106609777,LOC104956154 coding upstream 60156 7955026 ~ 7966534 (+)
AMCG00006531 NA coding upstream 75710 7936383 ~ 7950980 (+)
AMCG00006535 psmc2 coding upstream 115328 7907694 ~ 7911362 (+)
AMCG00006546 NA coding downstream 188049 8222881 ~ 8244037 (+)
AMCG00006551 NA coding downstream 609410 8644242 ~ 8660293 (+)
AMCG00006558 gpr85,LOC106576049 coding downstream 692811 8727643 ~ 8728326 (+)
AMCG00006556 bmt2 coding downstream 711762 8746594 ~ 8794059 (+)
AMCG00006555 NA coding downstream 764910 8799742 ~ 8807859 (+)
G110361 NA non-coding upstream 111862 7913850 ~ 7914828 (+)
G110286 NA non-coding upstream 331177 7694554 ~ 7695513 (+)
G110243 NA non-coding upstream 393571 7593287 ~ 7633119 (+)
G110245 NA non-coding upstream 693520 7327030 ~ 7333170 (+)
G110240 NA non-coding upstream 786133 7240086 ~ 7240557 (+)
G110429 NA non-coding downstream 53205 8088037 ~ 8090127 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding downstream 98263 8133095 ~ 8135492 (+)
G110444 NA non-coding downstream 138496 8173328 ~ 8175573 (+)
G110446 NA non-coding downstream 143689 8178521 ~ 8178728 (+)
G110447 NA non-coding downstream 144609 8179441 ~ 8179688 (+)
G110279 NA other upstream 371496 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1114436 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1438291 6519865 ~ 6588399 (+)
G110023 NA other upstream 2043781 5979062 ~ 5982909 (+)
AMCG00006459 NA other upstream 2891975 5127357 ~ 5134715 (+)
G110445 NA other downstream 140928 8175760 ~ 8176786 (+)
AMCG00006552 NA other downstream 675918 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1529120 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 4110913 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4585230 12620062 ~ 12651815 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027222 ube2h coding NC_007115.7 CM002888.2 15011341 ~ 15059876 (+)
grasscarp (Ctenopharyngodon idella) G112687 NA non-coding CI01000020 null 3303805 ~ 3304620 (+)
mexican tetra (Astyanax mexicanus) LOC103034312 NA non-coding NC_035906.1 CM008309.1 32669347 ~ 32690721 (+)