AMCG00006541 (nrf1,LOC107584621,LOC107690626)


Basic Information

Item Value
gene id AMCG00006541
gene name nrf1,LOC107584621,LOC107690626
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8065076 ~ 8087619 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006541
CTGGCTGCTCTTTGTCCTCCATTAGAGCTCGGATTCCCGGTTCCACTCTGTACGGCGCAGGCCCGCTGTAGCGCAGCCGCTCTGAGCCTCTTCCAGACCAGCGTCCGGCGATGGAGGACCACGGCGTGAACCAGGCGGAGCACATGACCACCATTGAGGCCCACGCGGTGGCGCAGCAGGTGCAGCAGGTGCACGTGGCCACCTACACCGAGCACAGCATGCTGAGTGCCGACGAGGACTCGCCCTCCTCCCCCGAGGACACCTCCTACGACGACTCGGACATCCTCACCTCCACCGGCGCCGACGAGGTCACGGCACACCTGGCGGCCGCTGGCCCAGTGGGGATGGCGGCCGCCGCTGCTGTGGCGACGGGGAAGAAGCGGAAACGGCCGCACATCTTCGAGTCCAACCCCTCGATCCGCAAGAGGCAGCAGACACGCCTGCTGAGGAAATTGAGGGCCACCTTAGATGAATATACCACTAGAGTGGGCCAGCAGGCCATCGTGCTGTGCATCTCCCCGTCCAAGCCCAATGCTGTGTTCAAAGTGTTCGGGGCCGCCCCCCTGGAGAATGTGGTCAGGAAGTACAAGAGCATGATCCTGGAGGACCTGGAGACCGCGCTGGCAGAGCATGCCCCTCCCCCGCCCGAGATGAGCTCCGAGCTGCCGCCCCTCACCATCGATGGCATCCCCGTGTCTGTGGACAAGATGACACAGGCCCAGCTCCGAGCATTCATCCCCGAGATGCTGAAGTATTCCACGGGCAGAGGCAAACCGGGCTGGGGCAAGGAGAGCTGCAAGCCCATCTGGTGGCCGGACGACATCCCTTGGGCGAACGTGCGCAGCGACGTCCGCAGCGAGGAGCAGAAACAGAGGGTCCTGTGGCATGACGCTGTGTCTTACGTCGTTGTGCAGGTGTCGTGGACGCAGGCCTTGCGCACGATCGTGAAGAACTGCTACAAGCAGCACGGCCGGGAGGACCTCCTCTACGCCTTCGAGGACCAGCAGGCGCCCCCGTCGCACGTGACCGCAGCCACCACGCACAGCATCGCCCACCTCGTCCCCTCGCAGACCGTGGTGCAGACCATCAGCAACCCCGACGGCACCGTCTCCCTCATACAAgtgggcacaggcgctACAGTAGCTACGCTTGCGGACGCCTCGGAGCTGCCCACGACCGTCACCGTGGCCCAGGTCAACTACTCCACAGTGACAGACGGGGAGGTCGAGCAGAACTGGGCGACGCTCCAAGGAGGGGAGATGACGATTCAGACGACCCAGGCCTCGGAGGCCACGCAGGCGGTGGCGTCGCTGGCGGAGGCCGCGGTGGCAGCGTCCCAGGAGATGCAGCAGGGAGCGACGGTTACCATGGCACTCAACAGCGAGGCGGCGGCCCACGCGGTGGCCACGCTGGCGGAGGCGACGCTGCAGGGCGGGGGGCAGATCGTCCTGGCCGGGGAGACCGCGGCCGCCGTGGGAGCGCTCACCGGGGTCCAGGACGCCAATGGTACTCACCGCTCACTACCTCCTGCTCACCCGCACACTTACCGCTTGGTCCAGATCCCCGTCAGTATGTACCAGACCGTGGTCACCAGCCTGGCGCAGGGGAACCGGCCGGTGCAAGTGGCCATGGCCCCCGTCGCCACCCGGATAGACAACAGCGTCACTCTGGACGGACAGGCAGTGGAAGTGGTGACCTTGGAACAGTGACCTCTCCCTGGGAGCGTGGCGTCAGCGCCTCCTGGCAGCCTCCTGGCGCCCAGCGCGTCGAGACTGGCGAAGACGAGGGCAGCTCTGCGGAGGAAGGCTGGGCCGggattttgtattgtataataaagtaattagaagacaaaaaaacatttccaggggtacaaaatatatatcattgcattttgtttactaTGTAAAGATGATGGGTTTTTTTAGTTGCATTTTTTGGCAATTTTGGCTATGTGGG

Function

symbol description
nrf1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including cellular response to cold; photoreceptor cell maintenance; and response to activity. Predicted to be active in nucleus. Is expressed in heart; nervous system; optic cup; and visceral fat. Human ortholog(s) of this gene implicated in Huntington's disease. Orthologous to human NRF1 (nuclear respiratory factor 1).

NR:

description
PREDICTED: nuclear respiratory factor 1

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070417 cellular response to cold biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11831 NRF1; nuclear respiratory factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006541 True 1956 mRNA 0.63 11 8065076 8087619

Neighbor

gene id symbol gene type direction distance location
AMCG00006542 klhdc10,LOC107587165,LOC107729855,LOC107690572 coding downstream 71165 7982084 ~ 7993911 (-)
AMCG00006538 NA coding downstream 139441 7913423 ~ 7925635 (-)
AMCG00006537 dnajc2 coding downstream 158876 7901616 ~ 7906200 (-)
AMCG00006536 NA coding downstream 177967 7880134 ~ 7887109 (-)
AMCG00006527 NA coding downstream 216547 7829952 ~ 7848529 (-)
AMCG00006544 NA coding upstream 418 8088037 ~ 8090151 (-)
AMCG00006543 strip2 coding upstream 3065 8090684 ~ 8120577 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding upstream 41260 8128879 ~ 8137211 (-)
AMCG00006548 NA coding upstream 81383 8169002 ~ 8169391 (-)
AMCG00006547 tmem209,LOC102778061 coding upstream 86622 8174241 ~ 8183554 (-)
G110369 psmc2 non-coding downstream 155848 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 308224 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 496917 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 497509 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 506608 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 922521 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1388863 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2217312 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 2333942 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2515476 10603095 ~ 10603733 (-)
G110195 NA other downstream 957938 7078389 ~ 7107138 (-)
G110140 NA other downstream 1279225 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2022152 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2461343 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3787921 4270416 ~ 4277155 (-)
G110507 NA other upstream 634769 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 696286 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 910018 8997637 ~ 8999264 (-)
G110605 NA other upstream 1457876 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1999656 10087275 ~ 10107285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028656 nrf1 coding NC_007115.7 CM002888.2 15081385 ~ 15103696 (-)
grasscarp (Ctenopharyngodon idella) CI01000020_03264878_03271412 NRF1 coding CI01000020 null 3264117 ~ 3272069 (+)