AMCG00006542 (klhdc10,LOC107587165,LOC107729855,LOC107690572)


Basic Information

Item Value
gene id AMCG00006542
gene name klhdc10,LOC107587165,LOC107729855,LOC107690572
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7982084 ~ 7993911 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006542
CAAGGCGCTCTCTGATTGGTCGGCGGTATTTAAGGCCTCCGCGGATTGGTGGAGGGTTTTGTCTGCGAGGTGGGCTGAGTTGTTTTAGTGTTTGGGATGCAAAAATCAGCCCTGACGAGCTTGCGTTTTAACATTTGATTGTAGGTAAATCATCATtcgtttatttaattttattgggggggggggaacatgTCCGCGACAGACGGAGCTGAAAACACCCGCTGTGTGGACCAGCTGAATAAATTCGAGAAACTGTCTGGGAGGACTCCATCGAGAACAGCAGGCTTTAAGAAGAGAGTACGGTGGCTGCCTGCTAGGAGACTCTTCACTCAACCTTGCCCCAGCTTCAGGATCCCTTACAGGTTTTTGAGAGAAGGTCACCGCGCCCCCCCGGCCCGGAGTGGACATCGCTGTGTGGCAGACAACTCCAACCTGTATGTGTTCGGAGGCTACAACCCGGACTACGATGAGTCTGGCGGCTCCGAGAATGAAGACTACCCTTTGTTCCGGGAGCTGTGGCGGTATCACTTTGCCACGGGCACTTGGCAGCAAATGAGAACGGAGGGCTACATGCCCACAGAGCTGGCCTCGATGTCAGCGGTCCTGCATGGCAACAACCTGCTGGTGTTCGGGGGCACCGGCATCCCGTTTGGCGAGAACAACGGCAACGACGTCCATGTGTGCAACGTCAAATACAAGCGCTGGTCTCTACTCAACTGCCGGGGGAAGAAGCCCAACCGCATATATGGACAGGCGATGGCCATTATAAATGGCTACCTGTATGTGTTTGGGGGAACGACGGGCTACATTTACAGCACAGACTTGCATAGACTGGACTTGACCACCCGCGAGTGGATCCACCTGAAGCCCTACAACCCCACCGATGAACTGCCCGAGGAACGGTACCGTCATGAGATCGCACACGATGGACAGAGGATATACATCCTAGGCGGAGGAACATCTTGGACTTCGTATCCCTTAGACAAGGTACACGCATACAACCTGGAGACGAATTGGTGGGAGGAGATCACAACGAAACCACATGAAAAAATAGGGTATCCAGCGGCGAGGAGGTGTCACAGCTGCGTACAGATCAGGAACGatgtttttatatgtggtgGTTATAACGGAGAGATGATACTGGGCGATCTGTGGAAGATCAGCTTGCAAACCTTCCAGTGGACAAAGCTGCCAGCCGTGATGCCGGAGCCGGCCTACTTCCACTGCGCTGCCGTGACCCCTGCTGGCTGTATGTACATCCATGGCGGAGTGGTGAACATTCATGAAAACAAGAGGACTGGCTCCCTGTTTAAGATCTGGCTGGTGGTGCCCAGCTTGTTGGAACTGTGCTGGGAGAAGCTGCTCAAGTCCTTCCCTCAGCTTGCCCAGCTCTCCACCCTGCAGCTTATAAACTTGGGTCTCACACAGGAACTCATAGAGCGATTGAAATAGGACCGACTCTCGGGAGGACGCCGGACGCCGACGGACACGGCAAGGACGGGCTGTGAGCTGAGGACTGGGAGGAGCTCCTTCGAGGATCTCCGGTGTGGGCCGCCTTAAACAAACATTGGAtgcctttttcccccctcccccttgcacttttaattaatttttttaaaccgAGTGGAATGTCTCGAGTCCGATTCCAGCCCGAGACATGGAGTCGCCCTTCCCAGCATGACGCGTGGACGCCGAGGTCACGGGCCTGTTTGTGACGTCCGAGCGGGGCACGGTTGCCTGCCTGCTTGTCGATAAAACACTACTTGTCGTATTGCCTTGTCAGTTCGAACAAAGGCCGGTCCTGGGCTCTTCTCCCGTCCCCGTTCCCGTCGCGGCTGTCGGACCCCGAGCGTGTGAAGGGAGAGGGTTGTCGGGGGGCGTTCGGTCACGTCAAATGGTTTATAGGCACAGTGTTAAAGTAGAGCCAGTGTTAAATTCATGTTCTAACCGTCAGCGTTTTGCATTCATACTTGGTCTTAATTTATTGATCGGAGTGGGGTTTTTAACGGTCTCTGGGGggcttttattttaagatcCCGTTTTAAATGCTTATTGTGCTCGGGCTTGCGTGACCAGGGCAGATCGGGGCTCTCGCATCCCTGTAGATCTGCTACTGAGGACGAGCGACCTGATCCGTTTAAACTGCGCCGAAATGAAATGCCTAGGATCCCCATTGCAAAGTGCAGCTCGTGTCTGGAAGGCAGGGCAAAACCTCCCCCATCAGCTAAGTCTTGACATGGATCTTAACCATCTGCTTTCTGGTCAACTGTAATATAGCCGACTTCCTCTTTCTGGTCTTCCCCGCCTTATTTTGTCTGCCTCAGTCTTCCTTGTTACTGCCTTCGATTTTACTGTTTACTGATGATGGTACACCAAATCAGATATCACTGTGAACATGGTGCTTCTTACATCCAAATGTTTCTTTTCCGTCGCTGTGTGTTGAAATGAATCTTTCCAATGGCCTTTTATTTACTTAACTTCCAAATGAACTGCGCGTTTGCAATTTTTAGAAGTTAAAACCAGTCGTAAGCAGGGCCTTTTTAATTTGACAAATCGGTTTCAGTGCCTTTTTCCCCCATTTAGCAAAGATATGAGTTTCTAATCCATCTGGATTCTTTTTAGTAACTTTAgtttgtataatacattttggttttaatgtgAACTTTAGATTTTATATTTCAGCTGTGGAAATGGAGATGGCTTAGGAAGACAAAATGAGTTGGAAGCcccttttgtttgttgtttttaaggttGGGAACTGTTCTTCGGATACGTATTTCAGATTTTCACTGAACAAATGAAGGAAGGTTCATCTTTTGTAAATGCTTACAGATATTTTGCTAATAACTATCGTTTAGATGCATGTGAAAGTACCTGGTGTGCATGTAATCATAActtgaatttttattttggaggggagggggtttcTTGTAATGAGTCCTTGCTGTGTAGAGAATGGTTTTAAGGCAATCACTAATTATATGTacttgtgtaattgtttttttttgttgtttgttgatgAATCAATAAAGTCCTaatgtaaactttgtttttatttctaggCTAGTGTTTTATCTGCGGTTACACATTGTGGTGGTTATGTTTTATACCACTTATCAAAGCATGTGGACTAGTCTGATTTGCAGGGTTTGTACAGAGCCCTTTCATATCAGGGTCAGTTCAGGAATTAATCTGAAaaggatattttaaattacagtcCTAGAAATAGAGGGGGTGAGGTTGTCTTAGTTTGATTATTTGGGATATAGTAGTGg

Function

symbol description
klhdc10 Predicted to be involved in positive regulation of stress-activated MAPK cascade. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human KLHDC10 (kelch domain containing 10).

NR:

description
PREDICTED: kelch domain-containing protein 10 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006542 True 3275 mRNA 0.48 10 7982084 7993911

Neighbor

gene id symbol gene type direction distance location
AMCG00006538 NA coding downstream 56449 7913423 ~ 7925635 (-)
AMCG00006537 dnajc2 coding downstream 75884 7901616 ~ 7906200 (-)
AMCG00006536 NA coding downstream 94975 7880134 ~ 7887109 (-)
AMCG00006527 NA coding downstream 133555 7829952 ~ 7848529 (-)
AMCG00006526 NA coding downstream 181037 7784020 ~ 7801047 (-)
AMCG00006541 nrf1,LOC107584621,LOC107690626 coding upstream 71165 8065076 ~ 8087619 (-)
AMCG00006544 NA coding upstream 94126 8088037 ~ 8090151 (-)
AMCG00006543 strip2 coding upstream 96773 8090684 ~ 8120577 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding upstream 134968 8128879 ~ 8137211 (-)
AMCG00006548 NA coding upstream 175091 8169002 ~ 8169391 (-)
G110369 psmc2 non-coding downstream 72856 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 225232 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 413925 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 414517 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 423616 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 1016229 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1482571 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2311020 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 2427650 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2609184 10603095 ~ 10603733 (-)
G110195 NA other downstream 874946 7078389 ~ 7107138 (-)
G110140 NA other downstream 1196233 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 1939160 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2378351 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3704929 4270416 ~ 4277155 (-)
G110507 NA other upstream 728477 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 789994 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 1003726 8997637 ~ 8999264 (-)
G110605 NA other upstream 1551584 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 2093364 10087275 ~ 10107285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location