AMCG00006543 (strip2)


Basic Information

Item Value
gene id AMCG00006543
gene name strip2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8090684 ~ 8120577 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006543
ATGCAGGCTCCCGACATGGACGGACCCGATAACAACAGTCACGGCAACGGCAAGCAGAGGCCGCTGCCCAAAGTCAGAGAACTGTTCAAAAGCCAGCGAAAGGAGTCGGAGGGGTCTATGGAGTCCCCCAACCTGGAGTTTGAGTATGGGGACACCGACAACCTTACTGCAGAGCTCTCAGAACTCTACAGCTACACCGAAGAGCCTGAATTTGCCCTGAATAGAGACTGTTTTGAAGAGGACTTCAGTAGTCAAGTGAAGGATAAGAAGTGGACGGAGCTGTCTCTCTCGGAGCAGAAGGCCTATGTGATGAGGCTGCTGGACATGTTGGAAGTCACGGACCGTGACAAGAGGCTGAAGGTGGCCAGAGCCATTCTCTACTTGGCACAAGGCGTGTTTGAGGAGTGCAACACCGAGGTGGACGTGCTGCAGTGGTCTCGACACAATGTCTTCCTGCTCTACCAGATGGGTACCTTCACCGcgctgctggagctgctgagCATGGAAATCGATAATAACCAGGCGTGCAGCAGCGCTCTGAGGAAGCCGGCCATCTCTCTGGCTGACAGCACGGAGCTCAGAGTCCTACTCAGCATCATGTACCTCATGGTGGAAACGATTCGCTGGGAAGCGGAGGAGGACGGGAGCGAGTGGAGAGCAGCCCGGGAGACCTTCAGGACGGAGCTAGGTTCCCCTCTGTACAACGGAGAACCTTTCGCTCTGCTGCTGTTCACCATGGTGACCAAGTTCTGCAGTATGAATGCCCCTCACTTTCCCATGAAGAAagtcctgctgctgctctggAAGACCATCCTGTTCACTCTGGGAGGATTCGAGCAACTGCAGGAGCTGAAGGTGAGGGGTCGAGAGAAGCTGGgcctgccccccctccctgaGGACAGCATCAAGGTGGTGCGCAGTATGAGGGCCGCCTCCCCCCCCGCTTCCGCCATGGAGCTCATtgagcagcagcaacaacagaaaCGAGGGCGCCGCAGTCGCAGGCCCTTGGTCAAGCAGGACAGCCTGGACACGTACAATGAGCGCGACCCATTCAAGAACGACGACGCGAGAGACGAGGAGGAGGACAATGAAGATGCAGACAGCGGGATCGAGGGAGAGGTGGACCCCCTGGACAGAGATGTCATCATACAGCCCCCCCCGCCTCCTCCACCTCTTCGGTCCTCCACTGAGAGGCTGTCGTTTCCCAAGGGGCTGCCCTGGGCTCCCAAAGTCAGgGGGAAAGACATTGAACACTTCCTGGAAACGAGCAGAAATAAATTCATCGGCTTCACTCTGGGAAATGATACAGAAACGTTGGTTGGCCTGCCAAGACCCATCCATGAGAGTGTGAAGACTCTTAAACAGCACAAATATGTTTCGATTGCAGAAGTACAGATCAAGAAGGAGGAAGAACTCCAGCAGTGTCCAATGAGCATGgGAGAAGAGGATGTTGAGGACATGCCAACTGAAATCCTCTACCTGGGAATGCTACCCAACTTGTCCCAGTATGTGATTGCCCTGTTGAAACTGCTGCTGGCTGCAGCCCCTACCTCGAAGGCCAAGACAGACTCCATTAACATCCTGGCAGACGTTCTGCCAGAGGAGATGCCGATCACGGTACTCCAGAGCATGAAGCTTGGAATCGATGTGAACCGACACAAGGAAGTGATCGTCAAGGCCATTTCGGCacttctgctgctgctcctgaAGCATTTCAAACTCAACCACATCTACCAGTTTGAATATGTTTCCCAGCACTTGGTGTTTGCCAACTGTATACCTCTGATCCTGAAGTTCTTCAACCAGAACATCATGTCTTATATCAGTGCCAAAAACAGTATCTGTGTCCTGGATTTCCCACACTGCGTGGTACACGAGATGCCCGAGCTCACGGCCGAGAGCCTGGAAGCTGGGGACTGCAACCAGTTCTGCTGGCGGAATCTCTTCTCCTGCATTAACCTGCTGAGGATTCTGAACAAGCTGACCAAGTGGAAACACTCCAGAACAATGATGCTGGTGGTGTTCAAGTCGGCTCCCATCCTGAAGCGCGCTCTGAAGGTGAAGCAGGCCATGATGCAACTGTACGTCCTGAAGCTGCTCAAGATCCAGACCAAGTACCTGGGGCGCCAGTGGAGGAAGAGCAACATGAAGACCATGTCGGCCATCTACCAGAAAGTCCGCCATCGCCTCAACGATGACTGGGCCTATGGCAACGATATCGACGCGCGGCCCTGGGACTTCCAGGCGGAGGAGTGCGCTCTGAGAGAGAGCATCGAGAAGTTCAACAGCCGCCGGTATGACAAGAACCAGAACGTGGACTTTACCCCCGTGGACAACTGCCTGCAGAGCGTGCTGGGCCAGCCTGTGGAGCTGCCGGAGGACTTCCAATACAGCTACGAGATGTGGCTGGAGAGGGAGGTTTTCTCCCAGCCCATCCAGTGGGAACAGCTGCTGCAGTCGGAGTGAGGACCCCCAGGGGCCCCTCCAGGGAACTGCTCAACCACCAACACGCAGTGAGAAGACCGCTGCAGTCAACACAGCGCTGCGCCGTGTCTGTGCCGGCCCAGACCAGCCTGCACACACTGGAACATGTGCCTACAGCTCTTCTCCTAATTATatcaatttacttttttatctCCCTGCCCCTACCACCTCCTCCTCGGCACTCAACACTTGAAGTTGGATGCTAGTGCAATAGTAGCCAAATGTCAGGTATTTCTCTGCACTCTAATGGTGCCTCGtgtctgtttatttagtttccttttGTCAGTTTGCTCTTCGCAGGTCTTGTGACCGTTCTTCTTCGAACCACTAACTTTGTGTTACTGCCAAATGCAATGGGACGAGTCTTCTGCTggtactggactggactggagccCACGTCCTAAGTAGTGGTTGTGCCACCAGCACCTCCACTACTGTTGTGATCTTTCGCATCGATGGAATATCGTAGTGCAACCAGTAAATCTGTAAAAATGTCAAGCGAGCACAATTACACCGTGTGACAAAACTGGGAGAGCAATACCGTGACACCAGGAAAATAGCAGTGGCAACATTTTATGACCTCAATACCATAGATTACCTTGGGGAGAAACTGGAACATAATTCGGGAAAGACTGCAGACATCCCTACAGATACAGAAATGGTTAGATAGACTAGATAGTTACTGGACTTTTATATGCAGAGGTCAAGAGTTTGCTCCTGCTAGTGTTTGACCTGCTGAAAGTGTAtgcagggattttttttttttttggaagagcactatttatagatatttaaatgtttgtctgCTACACAGATTCTTAGAGTTGTGATTATGTGTCACTTTGATTATGGGCAGACTTTTGCTTCTTAGGTCAAGTGTGTAAAAGGTTGGGGCACATTATGATAAACTTGGCTTCCAGCTCTTTTGGGCTTCAAGGACTGACCTACCTTATAACTTGGCATAAATATATACCAAGTAAACTCCTTGCTCTGTCAATTAAGTTCAAAGGTTATATCCCCCACCCAAAACAACTCTTCAGATCCTTGTTTATGGATGCATAAGCCATTGATGGAAAACTGTACAGGATGGATCTGCTCCCTCGCCTCCTCTCCGATATCCACCCGCTCCGAGGTCAGGCATCCAAGAAGGGTTGAAATAGGGactggcattattattataattatatattataatcagACGGATTTCCTTGgtttctgatttgtattttttgtttgtttgtatttatttatatatttttaactgtattaaaaataaggATAAAGGAGCCATTTGAAATTAAGCCACTGAAACTTGTGCAAAATCTACTGTGTGATATATTGCTACACAAACAGTGGACAGGACATAGTGTGGGGTGTCAGTGTTTCATTCATCTGCTTACGTAATTAGAACACTAATTAGAAAGGGTGGCAGTGTCAATGGGGAAAGCTGTACATTCCTTGTTCCATCTCTCAAGGTCAATTTGTCTGAACACCAGATCCTCTATCCTGCCTAAGTGAACAGTATCATACCTGAGTGAAGCTGTCTGAGCTTGTCAACGTCCTTGGTGAAGAGATGTCACCACTGATAGATCTATATTCAGGCAGCTCTGCATGCAgccgtttttattttatgtatctaCTCTCATACACAATGGGATGGAGAGAGCGTTGTGAAGAGCAGATAAAGAGCCCAAGGTTAAGCTTTTCTGCACCCGTAAACCGTGTCGGAAAACGTTCTTACGGGGGTATGGATACAAAACTgaccttgttgttttttttgttggtttgtttgatttgtttctctACACTTATTTTTGTTAGATTCCAGGGAGATTCCATGTGTCGCCCAGATGTGCCTCTGTCAATTGCCTTGACTTGTACtcattttatgtgtgtgtataatagcCGTTATGCAACAAAATTATTTGCAGGTCATGACAGGAAAGGCGACCAGAGGTCTCTCGTGTATTACTGTCCTATTCAGTATTGTGCGTGGATATCACACAAGAAAAGCCTGTTTTAATTTACTACTGCCAGAactttttactattttaaacttttttgtaaatgtttataaattatacttttaaatatcGATCGAACGATCCGTTTTTTTAGGCTGTGGCTTGTGTGAAAGCGGTTGTTCATTGCGGTTTCGGCCTCTCGCATTGTGCTGAGGGGTGAGACTGCACACTCTGAATTCCATTTTAAATCTTGAAGTGTGTGGCACACTAAATATCGAACCAGTGTTCAAATTGTTATGGTTTTTAAAAGTTCAAGTCTTCCATTTTCTGGGGATCAACATAGATGTCATCAATTCTGCTTTTGCCGTTACATGCCAGTCTATCCTAAGAAAGAGAGACCAGAATCTCgttttatttgtgaattaaaatgttgttctcCTTTGCAAGATGGTTACAAACCAATTAGTTTGTcaattgtattgatattttattgatatgaggtgaaaacatgtattaattcagGAAGAACATACAAGCCAACCCTTGTTTATCAGAATAAATGTGCAACACCTACTTTATCACAGCAGCCAAACTTCCATCACAGTCTCGTCTTTGCTCAGTCTTACCAGACAATACATGAGATACAAAGTTAAAAATGAACAatgctgaaaatatattttgaactgaCTAGTAAAGAGCTCAGGTATAATGAAAACCAGAGGCACTTTCTCTCTCTAGGTCCAGGTTCAGAGAATTCTGCACTAAGTGTAATGCGAAGGGAATTGGGACATAAAATCCTTCATTCCTGAAAACCACTAAAACAAACTATCATTTCTGGGAGcggtaaaatacttttattaaaaaatgacaactggtaTCTCAGGtttaatatcttttttttttttttttaattattgctaaTAATTTCTGAGATTTAAAGTTGATgtatagaaataaatgaattcgTTCTCAGTTCTTGTGCTTTCTGTAACCAAATTATAAGATCTGAGTCAAGATTGTGACACACGTTCTCTTCCACTCTGAGTTAATGTTCATCACTGATTCTCTTGGGACTTCAGTTCAGTGTTTCTAGTGCCAAACATTATTGTAGCGcacagtattgttttattgttgctaCTTTTCTATTCACGTTCGACTTTAAATGAATGCCTTATTCTGGGCTTGTCTGACGTCTAAATAAGCCTggtgtttgtttgcagtttaaaaatgtataatgcaaatTACATATGGGATGCTGTGTGTACTGTACAAAGAATATAAGACTGCCCTTGTTACtctaatgtgaaataaatgttttgttgggGTGTGTGTTTTTACCTACTGTTTTAATATGATATGCAACTTTGATTTACTGCAGTTACATAATATTATCTGTGTTTTTGATCTGGGTTATGTGCAATCGTTGATCGAATACAATGATATtcttctaatatatatatatatatatatatatatatattgaataaaagttgccaaaa

Function

symbol description
strip2 Acts upstream of or within regulation of cardiac muscle contraction. Predicted to be active in cytosol. Orthologous to human STRIP2 (striatin interacting protein 2).

NR:

description
striatin-interacting protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006543 True 5950 mRNA 0.45 21 8090684 8120577

Neighbor

gene id symbol gene type direction distance location
AMCG00006544 NA coding downstream 533 8088037 ~ 8090151 (-)
AMCG00006541 nrf1,LOC107584621,LOC107690626 coding downstream 3065 8065076 ~ 8087619 (-)
AMCG00006542 klhdc10,LOC107587165,LOC107729855,LOC107690572 coding downstream 96773 7982084 ~ 7993911 (-)
AMCG00006538 NA coding downstream 165049 7913423 ~ 7925635 (-)
AMCG00006537 dnajc2 coding downstream 184484 7901616 ~ 7906200 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding upstream 8302 8128879 ~ 8137211 (-)
AMCG00006548 NA coding upstream 48425 8169002 ~ 8169391 (-)
AMCG00006547 tmem209,LOC102778061 coding upstream 53664 8174241 ~ 8183554 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding upstream 298811 8419388 ~ 8424598 (-)
AMCG00006550 foxp2 coding upstream 356766 8477343 ~ 8512622 (-)
G110369 psmc2 non-coding downstream 181456 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 333832 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 522525 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 523117 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 532216 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 889563 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1355905 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2184354 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 2300984 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2482518 10603095 ~ 10603733 (-)
G110195 NA other downstream 983546 7078389 ~ 7107138 (-)
G110140 NA other downstream 1304833 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2047760 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2486951 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3813529 4270416 ~ 4277155 (-)
G110507 NA other upstream 601811 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 663328 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 877060 8997637 ~ 8999264 (-)
G110605 NA other upstream 1424918 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1966698 10087275 ~ 10107285 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020200 strip1 coding NC_007133.7 CM002906.2 9522971 ~ 9538071 (+)