AMCG00006546


Basic Information

Item Value
gene id AMCG00006546
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8222881 ~ 8244037 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006546
AGCTGATGTTCGCCTATTGTGTGGGAGGAAAACAGAACTCTGCCCCAGAGAAAGTCCAAAGTCACTTGGAAAACTCCACAAAGTACCACATCCAGCAGGCTCAGAGACAGCAAGTGAAGCAGTACCTCACGCTCGGCACCAAACTGACAAACCAGGGACGCATCTGCCACCCACATCCCGGACAGCCCCTGGGCTCCGTGCCGGTGATGAGGAATGGTCACCTGCCTGCGGTGAACGACAACAACACGCCGGACAGCCCAGTCTCTCTGCTCACTCTCGCCAGCAACCACGACAATGAGtttccAATGGATGAAGTTATTGATGACTTAATCAGCCTTGAATCCAGTTTCAATGATGAGGGCTTGGGATGCATGGAGCCTAACATCATAATGCAGAACAATGTGCCACTGAACAGCAGTATTTTGGATGTGTACGGCGGTGAGCAAGAACATGACACACGTGCTCTAGCCAAAGAACGACAGAAAAAAGACAACCACAATTTAATTGAAAGAAGACGGAGATACAACATTAACTACAGAATCAAGGAACTCGGTACGCTGATTCCGAAGTCAAATGACCCTGATATGCGCTGGAACAAAGGCACAATTTTAAAGGCATCGGTGGAGTACATTAAATGGCTGCAGAAGGAGCAGCAGCACGCGCGAGAGCTGGAGAGCAGGCAGAAGAAGCTGGAACAAGCCAACCGGAGGCTCCTGCTCCGAATCCAGGAGCTGGAGATTCAGGCTCGTGCCCACGGCCTCCCTGCCATGGCGACCTCCCTGGGAGCCATGGAGCTGTCTTCCCACCTcatgaagcagcagcagcaccagcagcagcagcagcagcagcaccagcagcagcagctgtacCCGGAGGAGATCAACGGCGAGTACGTCCCGACCAGTGCCGTGCCCCAGCTGTCGGACATGGACCACGGTGACGGCTCGTCCACCTTCTCCGACCCGCTGTCTCACTTCACGGACTTCTCCTTCAGTGCCACGCTCAAAGAGGAGCACCGGCTGGACGAGATCCTGATGGACGACCCCCTGTCTCCGTTCGGGACCGACCCCCTCCTGTCGGCCACGTCGCCCGGCGCGTCCAAAGGGAGCAGCCGGCGGAGCAGCTTCAGCTCTGACGACGGAGAAGACTTGTGATGGTGGCGACACGCCCTGCCTCTGTTTACATTCCTCCGAAAAAACCAAGTGCCAGTCCCCTCCTTCGCCCCGCCTGGAACCGCCAGGGTCCCCTCTGTGGTCCTCCTAAGCACTTCCTGTCTTGGTTCAATGGACCAAGCGTGTGCTCCACCGACAGGAGGCCACTTTCCACGTCAGTGCTTTGAAGGGCACCACAGGTTCCAGTGAAGAGACCAGTACAGTAAAGGGAGACATTGCTGGGATTCCACATTTTAGCACTCTGGTGCTAGCAGATTGTTAGCACACTAAATTCcacatgtaaatacagtatgtatagCAAAGAAGACGAGCGACAGTAATTAATACCTAATGCTTAAGAATGAAAAAGCCATCGTCGAAATGGCAGAGGACAACAAAGAACTGACCTCATCAGCTTGACCTCTGTTGTGCCTTAACTTAAGACAATACGTTTGCTCCTGAGACTTTAGACAATATGAATCCTCAGATAACAATGCTAATAGCCAGAAACTCTATGAGGCCTTTGAAattgtgtgttgtctgtctttttttattaacttttcaagtacttttgtgtatgtatttataaatgtttaatccaactattttaaactgcagtttattACAATATCTAACCTGTAACAACTTTTTATGTGGGGGTTGACGGGGAGAGACACAAtaaatctcttttttttaaa

Function

GO: NA

KEGG:

id description
K15591 TFEC; transcription factor EC

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006546 True 1849 mRNA 0.51 8 8222881 8244037

Neighbor

gene id symbol gene type direction distance location
AMCG00006540 ube2h,LOC105888480,LOC107676921 coding upstream 188049 8026690 ~ 8034832 (+)
AMCG00006539 NA coding upstream 222359 7993931 ~ 8000522 (+)
AMCG00006533 NA coding upstream 241787 7967991 ~ 7981094 (+)
AMCG00006529 smo,LOC106609777,LOC104956154 coding upstream 256347 7955026 ~ 7966534 (+)
AMCG00006531 NA coding upstream 271901 7936383 ~ 7950980 (+)
AMCG00006551 NA coding downstream 400205 8644242 ~ 8660293 (+)
AMCG00006558 gpr85,LOC106576049 coding downstream 483606 8727643 ~ 8728326 (+)
AMCG00006556 bmt2 coding downstream 502557 8746594 ~ 8794059 (+)
AMCG00006555 NA coding downstream 555705 8799742 ~ 8807859 (+)
AMCG00006557 NA coding downstream 630436 8874473 ~ 8885595 (+)
G110447 NA non-coding upstream 43193 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 44153 8178521 ~ 8178728 (+)
G110444 NA non-coding upstream 47308 8173328 ~ 8175573 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding upstream 87389 8133095 ~ 8135492 (+)
G110429 NA non-coding upstream 132754 8088037 ~ 8090127 (+)
G110523 NA non-coding downstream 551023 8795060 ~ 8795331 (+)
G110558 NA non-coding downstream 643649 8887686 ~ 8888492 (+)
G110590 NA non-coding downstream 1212628 9456665 ~ 9456911 (+)
G110681 NA non-coding downstream 1786389 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 2125678 10369715 ~ 10369931 (+)
G110445 NA other upstream 46095 8175760 ~ 8176786 (+)
G110279 NA other upstream 567687 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1310627 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 1634482 6519865 ~ 6588399 (+)
G110023 NA other upstream 2239972 5979062 ~ 5982909 (+)
AMCG00006552 NA other downstream 466713 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 1319915 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 3901708 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 4376025 12620062 ~ 12651815 (+)
G111197 NA other downstream 4767147 13011184 ~ 13043448 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027070 tfec coding NC_007115.7 CM002888.2 6032640 ~ 6047236 (+)
grasscarp (Ctenopharyngodon idella) CI01000335_00149953_00163006 TFEC coding CI01000335 null 149953 ~ 163539 (+)