AMCG00006547 (tmem209,LOC102778061)


Basic Information

Item Value
gene id AMCG00006547
gene name tmem209,LOC102778061
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8174241 ~ 8183554 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006547
GTGGAGATGTGTTTCCGGTGACATGCGCCTCACAGGCCGGGCAGGGAAGTGACGGCCAAGAGCGGGATAAGATGACGCCGGTGAAAGAGGGCCTGGTGCCCGCCCTCATCGACAGGACCATGAGGATGAGGAAGGAGGAGCAGGCGAGGAAGGTGGTGCTGGCCTGGGGCGTCCTCAACGTGTCTCTGGCTGGCATGATCTACACTGAAATGACAGGAAAATTGCTGAGTAAATATTATAACATCTCCTACTGGCCTCTCTGGTATATAGAGCTGGCACTGGCCTTCCTGTTCAGTCTCAACGCCCTATTTGACTTCTGGAGGTACTTCAAGTACACAGTGGCTCCCTCCAGCATCGTGGTCACTCCTGAGCAGCACCGGCTCCTGGGGCTGAGAAGCTCGGGTATCCAGGCCTCTCCTCCTCAGAAGCCAGAGAAGAAGGAGACCCCAGCCCCCGCCATGTCCTCCCCGATGCAGGGCCAGAGTGTGCTGAGTTACAGCCCCTCGCGGCCCCCCAGCACCAGCCCCAAGTTCTCCCCCAGCTGCATGACAGGGTACAGCCCTCCCCTGCAGAGTCCTTCACCACCCAGCTCCGGAAGCCCCTTCTCCTCTCCTGTGGCCTACTCTTCCACCAACAGCTTGAATAAGGTAATGAGCTACAGCCCCTCTTCCTCCAGCACCTCCCCGTACCCCAGCAGCATCGGCGCAGTCGAGAGCTCTAGCCTGAGGGCTCGCTACCGGACCTCCCCCTCCGTGTTCAACTCTCCAGGGGGCAAGGAGGATTACATGGCGGACCTCAAGTCCCTGGAGACATTCCTCCGCTCAGAGGACGAGAAGAGGCATCGCAGCCAGCTAGGGAGTCCCGAGTCAGTCTCTCCTTCAAACAGTCCCACCTTCTGGAACTACAATCGCTCGGTGGGAGACTACGCCCAGAGTCTCAGGAAGTTCCAGTACCAGCTGGCCTGCCGGTCCCAGGCTCCCTCGGCACACAAGGATGAGACGGACCTCGGCTCTAAACAGGCAGCTGAAGAGGTCTGGGCCAGGATCACCACCAACCGGCACCTGGTGGATCGGATCGACACGTGGACGGCCAAGCTGAGAAATTGGATCAATGACACCATCCTGGTTCCCCTGGTGAAGGAGATCGACTCCGTGAACACCCTGCTCAGGAGGATGGGCTGCCCGGAGCTGCAGACGGGGGAAGCCAGTATCAGCAGCCTGAAGCAAGCAGCTCTAGTGAAGGCCTCCTTAATTCCCACCCTGAACGCCATTGTTCAGTACCTGGACATCACCCCCAACCAAGAGTACCTGGTGGAGCGGATCAAAGAGCTGGCGCACGGGGGCTGCATGAGCTCCTTCCGGTGGAACAGCGGCGGCGACATCAAGGCCAGGAAGTGGGACACCGACCTGCCCACGGACTCGGCGATCATCATGCATGTTTTCTGCACATACCTGGACTCCCGGCTCCCTCCGCATCCCAAATACCCGGATGGGAAGACATTCACCTCCCAGCACTTCATCCAGACGCCGGACAAGCCAGACATGACCAATGAGAACCTGTTCTGTATCCATCAGAGCAGCACTAACCCCCCCCACTACCAGCTCATCTACCAGGGCCACATCTACAATCTGCCAAAGGGCCGAAACAACATGTTCCACACGGTGCTGATGTTCCTGTTTGTCATTAAGGCCAAGGAATCGGGAATGCTAGGACGAGTGAATCTTGGCTTATCGGGTGTGAACATCCTGTGGATATTTGGAGACTAATGAACTCCGAATGCCTTGAATTTCTGATGCTTGTGAACAGTTCCAGTAAATCAAGGAAACTTCACATTTGAAGTACAAAGGCAACAAATCTATTCTACCAAAATATAACTCCACCCATGGGAGTTTGGTTGACGTTGTTcacgtttttattttagaaagtaATCTAAGAGACCAGCAGTACAATAACTGTTACATTACAGCCTCTTTACCTCCGTAGGAAACTGCTGCTCAAGTCTTTTTTGAAAGAGCCGCAAGCAGTAACTTGTTGGCTAATGTAAGTGGTCTTCCTGACCCTTTACCAgcaaaatctgattaaatgaaaacttgaaTCTGTTTAGTTGTATTCCTGAATGTTTTGTATGTGGTTAAGAGCCTcggctgtattttttttaatcggtgctctttctgcatttttccatttttcaaaCACTCATATGAGGccattgtaaaataattcatGTAAACCGAAAGAAATGTTagaccttttttaaaaaacaatgtatattaaatctGTATATATGAACTCAATGCAGGATGCttacatgtttttgtataaaCTATACTTTTACTGTCACCACCTATTCAAATCTGTTGTAAATATGAGGATTTTAATAAACCACGGTTCAGTTAGATTTATATTTCTCAGTTCACACTACCGTTTCTAAATTATTCTTAATATTTaaggatgtttgtttttaaaaagttgcACAGTGTTTGCAGCCTTAACACGTCAAAGTCAGAGTTCATTATGTTCAGCttactgctgctgttttcagaCTTCATTACCTGTCTTAATAATTTGAGTGTCTTTGATTTAGAAAAAGACGTTTCTTTGACCTGCCGCTGAATTCGTGTGGCAGAATGAGAATAAAGATTTTGCCATTTCTAAAGA

Function

symbol description
tmem209 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM209 (transmembrane protein 209).

NR:

description
PREDICTED: transmembrane protein 209

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006547 True 2658 mRNA 0.50 15 8174241 8183554

Neighbor

gene id symbol gene type direction distance location
AMCG00006548 NA coding downstream 4850 8169002 ~ 8169391 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding downstream 37030 8128879 ~ 8137211 (-)
AMCG00006543 strip2 coding downstream 53664 8090684 ~ 8120577 (-)
AMCG00006544 NA coding downstream 84090 8088037 ~ 8090151 (-)
AMCG00006541 nrf1,LOC107584621,LOC107690626 coding downstream 86622 8065076 ~ 8087619 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding upstream 235834 8419388 ~ 8424598 (-)
AMCG00006550 foxp2 coding upstream 293789 8477343 ~ 8512622 (-)
AMCG00006553 NA coding upstream 668189 8851743 ~ 8856674 (-)
AMCG00006554 NA coding upstream 674791 8858345 ~ 8869522 (-)
AMCG00006559 LOC102797044,LOC102787037 coding upstream 704137 8887691 ~ 8912003 (-)
G110369 psmc2 non-coding downstream 265013 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 417389 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 606082 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 606674 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 615773 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 826586 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1292928 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2121377 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 2238007 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2419541 10603095 ~ 10603733 (-)
G110195 NA other downstream 1067103 7078389 ~ 7107138 (-)
G110140 NA other downstream 1388390 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2131317 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2570508 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3897086 4270416 ~ 4277155 (-)
G110507 NA other upstream 538834 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 600351 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 814083 8997637 ~ 8999264 (-)
G110605 NA other upstream 1361941 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1903721 10087275 ~ 10107285 (-)

Expression


Co-expression Network