AMCG00006548


Basic Information

Item Value
gene id AMCG00006548
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8169002 ~ 8169391 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006548
ATGTCGGTCCAGGTTGTGGCAGTGAAAATGGCCGAGGTCGAGCTGAAAGACATCCCCAGCAAAGATCTGCCCCCCGTGTCCCCAGTGCCACCCAAGGCGGAGGAGAAGCCGGCCGTGAAAAACGAGGCTAATGCCGCCGCCGCTCCCGGCAGTGCGGACCCCAGCCCCCCAACCCCGAGCCCGAACCCCGTGAAGATGCCGCAGGCGTCGGCGCTGAAGCGGACCGACCCGCAGCAGAACGGCGGGGAAGCCTTCGTGAACCGCGACGGGACGGTGGCCGAAGCCCCGAGGACCGTGAAAAAGGTGAGGGGGAGCTGCAAGTGTGCATCTGCGCCTCACGGCAGCCTGTCATTGATTGGGGTTATGATGCGAAATCGGCATTGTGCGTGA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006548 True 390 mRNA 0.65 1 8169002 8169391

Neighbor

gene id symbol gene type direction distance location
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding downstream 31791 8128879 ~ 8137211 (-)
AMCG00006543 strip2 coding downstream 48425 8090684 ~ 8120577 (-)
AMCG00006544 NA coding downstream 78851 8088037 ~ 8090151 (-)
AMCG00006541 nrf1,LOC107584621,LOC107690626 coding downstream 81383 8065076 ~ 8087619 (-)
AMCG00006542 klhdc10,LOC107587165,LOC107729855,LOC107690572 coding downstream 175091 7982084 ~ 7993911 (-)
AMCG00006547 tmem209,LOC102778061 coding upstream 4850 8174241 ~ 8183554 (-)
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding upstream 249997 8419388 ~ 8424598 (-)
AMCG00006550 foxp2 coding upstream 307952 8477343 ~ 8512622 (-)
AMCG00006553 NA coding upstream 682352 8851743 ~ 8856674 (-)
AMCG00006554 NA coding upstream 688954 8858345 ~ 8869522 (-)
G110369 psmc2 non-coding downstream 259774 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 412150 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 600843 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 601435 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 610534 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 840749 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 1307091 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 2135540 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 2252170 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2433704 10603095 ~ 10603733 (-)
G110195 NA other downstream 1061864 7078389 ~ 7107138 (-)
G110140 NA other downstream 1383151 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2126078 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2565269 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 3891847 4270416 ~ 4277155 (-)
G110507 NA other upstream 552997 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 614514 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 828246 8997637 ~ 8999264 (-)
G110605 NA other upstream 1376104 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1917884 10087275 ~ 10107285 (-)

Expression


Co-expression Network