AMCG00006550 (foxp2)


Basic Information

Item Value
gene id AMCG00006550
gene name foxp2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8477343 ~ 8512622 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006550
CGTCTCCCTAAGCAGGTGCCTGTGTCAGTGGCCATGATGACTCCCCAGGTGATCACCCCCCAGCAAATGCAGCAGATCCTCCAGCAGCAAGTCCTCTCCCCTCAGCAGCTCCAGGCtctcctccagcagcagcaagcaGTCATGTTACAGCAGCAACATCTCCAGGAGTTCTACAAGAAACAACAGGAACAGTTACACCTCCAGCTTCTACAACAGCAGCACCCAGGCAAGCAGCAGAAAGAGcaacagcagcagcagcagcagcagcagcagttagCAGCCCAGCAGCTTGTcttccagcagcagctcctccagaTGCaacagctccagcagcagcagcacctgcTCAACCTGCAGCGCCAAGGCCTCATCTCCATGCCTCCCGGACAGGCGGCCCTCCCTGTCCAGTCCCTGCCCCAAGCTGGCCTGAGCCCTGCAGAAATCCAGCAATTATGGAAAGAAGTGACTGGGGCTCACAATATGGAAGACAATGGCATTAAACACGGAGGGCTTGACCTCACGACTAACAATTCTTCCTCTACTACCTCCTCTACCACTTCCAAAGCATCGCCACCGATTACTCATCATTCCATGGTGAATGGCCAGTCCTCAATCCTCAATGCgaggagagagagCTCGTTACACGAGGAGACTGGGGCCTCTCATTCCCTCTACGGCCATGGGGTGTGCAAATGGCCCGGGTGCGAGAGCATTTGCGACGATTTCGGCCAGTTTTTGAAGCACCTTAACAGCGAGCACGCGTTGGATGACAGAAGCACCGCGCAGTGTCGTGTTCAGATGCAAGTCGTACAACAGTTAGAGATACAGCTTTCTAAAGAACGTGAACGCCTTCAGGCGATGATGACCCACTTGCACATGCGACCCTCAGAGCCCAAGCAGTCTCCAAAACCCCTCAACTTGGTGTCGAGTGTCACTATGTCAAAGAACATGTCGGAGACGTCCCCTCCAAACTTACCTCAAACGCCCACTACGCCAACGGCCCCCGTCACCCCTCTGTCCCAGGGGCCCTCGGTCATCACCCCCGCCAGCGTGCCCAACGTCGGAGCCATCCGGAGACGGCATTCGGACAAGTACACCATTCCCATGTCGTCAGagaTTGCCCCAAACTATGAGTTTTATAAGAATGCAGATGTCAGACCTCCATTTACTTATGCAACTCTCATAAGGCAGGCTATCATGGAAGCAGCTGACAGGCAGTTAACACTCAACGAGATTTACAGCTGGTTCACACGGACATTCGCCTACTTCAGGCGTAATGCAGCAACTTGGAAGaatGCAGTCCGCCATAATCTCAGCCTGCACAAGTGTTTTGTTCGAGTAGAAAATGTGAAAGGGGCAGTGTGGACAGTGGATGAAGTCGAATACCAAAAGCGCAGGTCACAGAAGATAACGGGAAGCCCAACGTTAGTTAAAAACCTGCCGACTAGCCTGGGTTATGGAGCAGCGCTTAATGCGAGCTTACAGgcCGCGTTAGCAGAGAGTAGTTTACCCTTGCTTGGAAACCCCGGTCTGATCAATACCAGCTCCAGTGGATTATTGCAAGCAGCTCATGAAGACCTCAATGGTTCACTAGACCACCTTGACAGCAATGGGAACAGCAGTCCAGGGTATTCGCCACAGACTCACATGCAAGCGATTCACGTCAAGGAAGAACCGTTAAACACAGAAGACGAAGAGTGTCCGATGTCGTTAGTGacaacagccaatcacagtcCGGAGCTAGAAGACGACAGAGAAATCGAGGAGGAGAATCTATCCGAGGACTTGGAGTAACTGGACTTAAGGAACTGCAGCCACAGGGTCGCTTCATGGACCTCCATAACCACTCCACTACCAAGAATATATGGCAGACTTTACTGTGACTATTTATTGAGCATGCATCAAGGAGACAGCCTAAAGGAACTATTTGTTACAGCCCTTTGGGAACCAGAAATGACGAGCATCAAATGCTTGGTTTTTAACCTATAAaagactgatttccttataaaCTCAAATGGCTTGgccatataaaaaaaaaaagaaaataaaaattggctATCATGGGTTCATGGATTGAACGAAAAACGAGGAAGTCTGTTCTGTAGAAAGCTAATGGCCTCATATACTGccaaaaaaatagttttagtttCATTCAGTGTGAATTTCCAACCTGCAGTAGTTGTTAATACTAGAAACAATTGCTGATCCAGTTCaagttgttgctgttttatcaTTTGCACAGGAGTAGTATCAGAAATTAGTGTCACTGCCTGTATGTAGCTGAAATTTTAAGATGGaccagtatttttttatttttttattttatttcattttaattttggcgCCACCAACTGTAAATGACATTAGTTTCCAATAACAGAACCAGTTATCAGACTGTTGCAAGTTTGAACTgtccaaaaaatgaaaaaaaatgaaaaaaaaagtaggctTCCAGTCTTTGTTTGTGCTGAAATGTGAAGTGTGATCTTAAgttgaaaatgtaactgtttgTGCAAGCACCatacttcaaaaaaaaaaagaaaaagaaaaaaaaaacttgtaaaaaaagaaaaaaatgcgtTTCTGCATATTCTACAACTGTTCTCTTTACCTCCTCGTTCTGAAGCTTTGTCTACCTGCAAACAGTCAAAGGCAACAGCTAGAAACCAAAGCCAACTCTAACGATGGCCAATAGCTCAGACAGAAGCAGCCACACGCTTTGGTCAGCCTTCTGTAATTAGTACAAAGGAAGCTTTCCAAGAACTACCTTCTGATAACCTCTGGGATTGTTTCATTTAGCCCtgtacaaagaaaatacaatgattttgatgtgtaatttgattaaatagtGGAGAGTCCACCTGAAATGCAACAGAGTTCTCTCTGCATTTACAGCGCGTGGAGAAATGATGTAAATCGAAACGTAGCTGGTGGAAACCGGTAGGGAGCAGCTTCGTGTGGATCACAAAAACCACTGACCAAAAcgacatttgtgtatttaatggAAGTGCAGAATTTGTACTGTTGTATAATTCCagtttggtttaattttcatttcccatgattgtcattgtttttgtagtgAATATGTAATGTTAGTGGGACTGTCTtgtatgttttgtcttttccttttttgtacaAGTTGTTCAGAACCGTcttaaatgaaactgaaaacatagTAACCAAACATTAAAAGATCTAGTGAAgccaaaaacataataataatttcaagttGATATGAAATGATCTGGCTTGGTTTTCAAGTAAAAGCAAAGAGTATAGCCATTGTAGTGTAGGATGTCTGAGGTGAAATAGCCTTTTCTAGGTgatattttgcttaattttaagTTTGTAATACAGTGAATTGTTTGTTAAATATTCATCCATATCTAGCTCTTGGTGGATAGATATGGGTAAATAAGTAATCTGTTAGGGGCATCACATTTCCAGTTAATTCAGACTCTTTTTACAGCATTTGTGATTTTGCAATACTTTGgactaaaatgtgtgttttggtaACAAgtaatatttgttaatatttatttgaaactttttttaagCTAATGTCATCTAGAAAAGCAGATGTGGTTGCTTTAACGgtcatttctgttttcagtcaAACCAAAGTTACACAAAATTCTGCCTCTTCTTATACGGGATAGTAAAGCTAACAATACACTCCCTTTTAAAGACTTGCACACGGTCCAAATTGTTGGTATGCTGGCTTTCTTGGTCCTTGTTTTGCTAAAACTACCAATGCATAAAAATTTTTctaataatttgtaataatgcatttgcattgtatttaaaatacaaatgtatgtctACTTTGTGCttataaaaacatactgtatatatatgttgctTTTCAAGTGCTGTGCCAAGTCTTTGTAAtcctttacttttttcccccaaccaAGGGACCTCATAACCTGATTATGGTTATTGCTTTACAAACAGTTTTTGACAGAAGGTGGCTGCTAGAgcttaacacacacaccagttCCATGGGAAGGGGCTGGTTCCTGCAACTAAGCTCATCATTTATTCTTTGCTGGAGTCAGCAAATAGACTTAAAGACATACAGAATCATCTATCACGCCAAATATAAGGACACAATGTCTTTCAAAAGGGTTCTCCCACTCACCCAAAAGGCTTTCTAAAAGGTTCTACCTCTGCACAACAAATCCAGAACAATTACGACAGATTGCACGAGTTGTAAGAATGCCACAATAgctgttacattttattatgctCGTCTTACGGACACGGTCAACAGAAGGTTTACATTCCCAATGTCAGAAACGGAAGATTTGCATTGTAATAGGTTGTCTTCAAACATTTGTAGAATGATAATTTAAAGATTACCTGCAAGGGAATATtgtgttttcaaatgcatgtcTAAAATACTTTGGTGGACtggaaataataagaataaaaaataaataaaaaatacatgtaataactTTACCATCAGGAAGGTGGCCTACGTGTACAATGCTAAAGTATGCATACCTCAGATAAACTACTTtttgggaaggaaaaaaaagtctcaGCCACAGAATGCATATAACCTGTAGATTTTGCATGGGTTTTGtataaatactgtttaaaatagcTGCTTGCACATAATACCAGAAAAACCTCCAAAACTGCAATTTGCTTCTACACTAGATTTTAGGTTTGTTGGGGTTTTCTGAGATGCTTTGTCTGTATTTTGATAATTGTgcatattatgtaaaaatgttgGTGGACCCATAAATTACCAGACTTTtttctaagaaaaaaaataatgttgctttaatgcatttcataaatTTTTACTCTTATATCATCGCTTGCTAGGAATAGCAAACCTGCTTTTTCTGCATCTGCTTTGCGTAGCTGTTGTAAGCTTTAAactaatatgtgtatttattgcttGAACTTCTGTGCATACCTTATGAAGCATTATGTCCTGCAATTGAGTCATGTATTCTTTCTACTATCATATGCTGATGACTGGGAATAGGATCCCCTCTGTATACAGTAAATTTGAACTGTAGcacaaaacatctgtttatgtatttggtggatacctttttgtttatttatcttttttgagGTAAACTAATTTTTGATACTTTTCATTACTGTGTACTGTGTTCATACCTTGAATTCTCTGACATTAGAAGTCATGGTTGAGAATTGTAACAGCTGTTATTTGTTCTGTATTCATGGCTTTTCActgctg

Function

symbol description
foxp2 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to ethanol. Predicted to be active in nucleus. Is expressed in head; heart tube; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; autism spectrum disorder (multiple); communication disorder (multiple); dyslexia; and major depressive disorder. Orthologous to human FOXP2 (forkhead box P2).

NR:

description
forkhead box protein P2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09409 FOXP2_4; forkhead box protein P2/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006550 True 5233 mRNA 0.41 14 8477343 8512622

Neighbor

gene id symbol gene type direction distance location
AMCG00006549 mdfic,si:ch211-262n1.4,LOC107656347,LOC107658868,LOC107584008 coding downstream 52745 8419388 ~ 8424598 (-)
AMCG00006547 tmem209,LOC102778061 coding downstream 293789 8174241 ~ 8183554 (-)
AMCG00006548 NA coding downstream 307952 8169002 ~ 8169391 (-)
AMCG00006545 LOC107725924,LOC107658882,LOC107583963,LOC107656398,LOC103371314 coding downstream 340132 8128879 ~ 8137211 (-)
AMCG00006543 strip2 coding downstream 356766 8090684 ~ 8120577 (-)
AMCG00006553 NA coding upstream 339121 8851743 ~ 8856674 (-)
AMCG00006554 NA coding upstream 345723 8858345 ~ 8869522 (-)
AMCG00006559 LOC102797044,LOC102787037 coding upstream 375069 8887691 ~ 8912003 (-)
AMCG00006562 LOC105007066,LOC106576072,LOC106609221 coding upstream 682814 9195436 ~ 9197467 (-)
AMCG00006571 dnm1l,LOC107716704,LOC106561645 coding upstream 1058867 9571489 ~ 9587506 (-)
G110369 psmc2 non-coding downstream 568115 7907558 ~ 7909228 (-)
G110309 NA non-coding downstream 720491 7756625 ~ 7756852 (-)
G110271 NA non-coding downstream 909184 7567888 ~ 7568159 (-)
G110270 NA non-coding downstream 909776 7567204 ~ 7567567 (-)
G110269 magi2 non-coding downstream 918875 7558205 ~ 7558468 (-)
G110576 NA non-coding upstream 497518 9010140 ~ 9014326 (-)
G110594 NA non-coding upstream 963860 9476482 ~ 9477506 (-)
G110720 NA non-coding upstream 1792309 10304931 ~ 10305247 (-)
G110733 LOC103376870 non-coding upstream 1908939 10421561 ~ 10470060 (-)
G110757 LOC103376870 non-coding upstream 2090473 10603095 ~ 10603733 (-)
G110195 NA other downstream 1370205 7078389 ~ 7107138 (-)
G110140 NA other downstream 1691492 6785313 ~ 6785851 (-)
AMCG00006491 NA other downstream 2434419 6014104 ~ 6042924 (-)
AMCG00006476 NA other downstream 2873610 5577470 ~ 5603733 (-)
AMCG00006429 NA other downstream 4200188 4270416 ~ 4277155 (-)
G110507 NA other upstream 209766 8722388 ~ 8724352 (-)
G110520 bmt2 other upstream 271283 8783905 ~ 8794062 (-)
G110570 LOC106576073 other upstream 485015 8997637 ~ 8999264 (-)
G110605 NA other upstream 1032873 9545495 ~ 9560104 (-)
AMCG00006579 yaf2,LOC108439407,LOC105018284,LOC106573089,LOC106561625 other upstream 1574653 10087275 ~ 10107285 (-)

Expression


Co-expression Network