AMCG00006551


Basic Information

Item Value
gene id AMCG00006551
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8644242 ~ 8660293 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006551
ATGGCAAAGCGCCTGCATGTTCTCACAGACAGCCCAATGGAGTCCGATGGAGAACCAAAGCAATCTGGAGCCCCTCACCTCTTGGAAGTCCTCGACAGTTACTCCTGGGGTGAGGACAATGACGAGAGCACCATCACACCGAAGTCATCACCCCTTCCCCGCAGAAAGACCTCCGTCTCATCAGATGATTCTGAGCCGGAGCCCCCAAGCGTGATATTGAGAAAAGTTTCCTTTGCAGATGCGTTTGGTCTAGATCTCGTGTCGGTGAAAGAGTTTGATACCTGGGATGTACCTATTAAATCATTCAGTGATTCCCCGGAGGGAGAAGCCCATGACTTTGAGgaatattttctttcatcttgGTTCACGCTACCATCCTCCCATTATGAACTCATGCAAAAAGTGTATGACCAGAAGGTAGAGTTGGAAAGCATTGAGTTCCTACCTGGTTTAACATCGATGAAGGGAGTAATCCGAGTCCTGAATGTAAGCTTTAAAAAATTGGTATATGTTCGTATGACTTTAGATGCCTGGAATAGTTTTTATGACCTGTTGGCAGAATACATCCCTGGTTCCAGTGATGGCGAGACCGACCAGTTTTCCTTTAAGATTTGCTTAGTGCCACCATATCAAAAAGAGGGAGCAAAAATCGAGTTCTGCATTCGGTATGAGACATCAGCTGGCACTTTCTGGGCAAACAACAATGGAGCAAACTATACACTTTGCTGTAACAAAAAGGAAGTTGTAAGAGAGaaacaacaagaagaaaatagcaataaaaacaagaaaagctgtttaaaaacaatcagcaaGGAAAATGTCACAGAAGTAAATGACACAGTGGTTCATGCAGAGACTCCagGTACAGCCAATCCTGAAAGGGAAGAAGCTGTTGGAGAAAGCTCTGAAACGCCTGTGCAGTATCCCAAAGTGCCTCGTGCAGCTGAAGCACAACTGGAAATACTGGTGGATAACAACCTGAATATCACAGGAATGAAAGAGAGCAGAGAAGTGCTTCGTTCATCAGACACACAAGACCATTACTTTCCAGGAGGTACTGAAGCAAAACAGAATCCAATTCCTACTGAAGAACAGGGGGACAtcagcacacacatacaatctCAGGACCCTGAAATAAGCACATCTTTGTCTGAGAGAACTGGACTCCTGCTTGAAGAGTGTGTGGATATCCAGACCAACAACAAGGAGACTACAAATCAGAAGCCACTGATAAATGACCAAATTCCTTTGTTGTCATTGCATAGTGATTTGAACAAAGACGACATACTACCATTGAAACAAGATGATAAAGAGGCATTTGGTCAAGAGGGAAAGGAAGATGCTACTTCGCTTCAACCCCTTGAAGACCAGACCTTCAATACTTATGAGAATGATGTATTGGATGGACTGGTCATTATTGAAGAGGAGGGTGTAACAGTCTGTGAAACAGACGTGGATGTGCGGGCTTCTCAGAGTAGACTATTGAACCATACTCCTGAAATAACTGTAACTTCTGCAGAAGTATTCATTGTCAGGGAAGACATTGAAGCTGCTTCTGCATGTACAAACAGGGAGAGCCAGAGTATCAGTGAACAGGATTCAAAAGCATGGGCACACATTGAAACTGAAGTCAATGGAGGGAATAGCACGGATCAGCCACAAAGCAACACAGAGAGTCCAGACGCAACAGGGAACGAGATCCCACTGGATCGAGGTATGTTAAGAGATATACCTTCAATAGTATTTGAGACTGCTAGTCCAGCATTTGATGATACAGCACATTATGGCATGAAACAGGAAGTGTGGGGTGCCATTCAAGAGAATGTGAAGGAATTGACATGTGACAAAGAGGAGATGGGAAGACAGCAAGACACACCGACCTGCACAGCCAGTTCCCTGGAGATAGCAAATGCTTATCCTCAGCTCCCAGCCGGTGTTTGTGAGACACCCATGGATGAGCTATCAATTCAGTATGAAGCTGTTGAATCAATAGCAGCACAGTCACCTTGTGGAACAACAAGAGTAGTCCTTACTGAGGAAGAAGAGATTGTATCTGAAGATCTTGAAACCCCGGAGCTGAAACAAGGAGATCTTCAAATACAGGTGCTGCAGGACAGAAAGCAGAATGAAGCAGCTGGAGAGGGATTTGTCTCAGATTGGTGTTTTGAACATGTTGAGAGTGCTGCTGTACAGGATACTGGTCATATACAAGACATTTCTCACTCCTCAACAATCGCAGAGCAGGAATGCACAGATAAAGAAACCATGCCCAATGTAGAACACTACCAGACTGCAGAAGAGACTTTGATGAACAccaaaagaaatggaaaaacacccGAAGAATTAGAAATGTACTCTTTCTCTGCAGAAACAGAAAGGGAACCGGAACTTCCTGTGCCCACACACATGCTTTTGAGTGACAGAAGGACAGTTTTAGATGTAgtacaagaagaagaagaagaaaaagaagaggaaaaaggaGCAGATGAAGGTGGAAAAGATAAAGACATCAACACAGATCATCGGTCTTCCATCACAGGTGGCAAGATGGACTCAAGACCAAGAGGTCCAGCAAGGAGTAGTCGTAAGAGAGGGGCGTTCCACCATGCCTCCAGCCACAGGAGGGAGAGACACAGCACACTTTCTCCATTCCTTGGCAAAAGATCTATTGAGGACAGCAGTCAAAATTTGCGTAAACCTGTTATATTAGTAAGCCAACCTGCATGCGataaaagtgaaagtgaaagtgaagaTGAAGACGAAGCCCTCAGAGAAGACCAGGCACAAGCAGAAGACTCAGAGAGGCATCCAGGTAAAGAGCAGGCTGCTGGGGAAACAACAGAATATGAGGGAAGAAATGATCTAATTAACTGGAATGGAAAACTATTGGGTTGGCATCATGTTTCGAAAgagttaatatatttaatcctGTTTATAATCTTTCTTGTAACAGCCTATCATTATGATTTCATGGCCTGCTTTGTACtttacatattttctgtgtaCTGGCTGTGTTGTCAGAAGGGCAAACAAGGAGAATCGTTTGCACGGAAGTGACATATCACTGACTTACAACACAATGGGGTTTACTATTCCGAGGGCTCAGCAACTGCCTTTTGTTCCAATGGGGCACCATCGTGACGTTTACTTGAAGGTGGTGGTGGGTAGTGTGGGTTTTAGCTGTCACATTAGCTCATGATGTAGTTTTATGGCAAATTGTACACCTCAGCTGAAGTTAATCTGAATGGGACGAAACATTAATCAAACGAGCACGCAAAGTAAGGAAGTTGTGTGAGGGGAAATACACGAAACAAACACGAAATGCTAAAATGCTTCATATTCTTACCATTTATAAAATACTAGATCAGTAAGaaagcacagaaaatgtccaaaaAGAACAAATGATGGAACtgatgtttaacaaaatatttaaatgaattatattgtttaaaacattagtaATTGAAACATGATTACTATTTAGCAAGTTAATGCCGTTCCCCAGATTCTTTAAGGATTACAATGTTATCtataacttattttgttttcatttctgttatttGGAGTCTTCTTTTGGACATTGGTTTGAAAgtgttcatttgtattatttatcttctCATAAGCACCTATAACAATGCACATCTTgtctctgttgtttttttaaattatttatttatttttatttaactttattatgtttttttcacccTAAAAAGCACCCATTTGTCATCATAACATACTTTGTCTGGCATCATTACTCACCTAGTGTCTGACAAATGATATTGGTGAGGTGTATAATTAATGTAACTCTTTCTACAACCACAGAAAGAGGAGTTGTTTCTGAATTGATTTATCTATTACTTATACATACAAGGGGTAtgaaaatcaattcaaataGGCTGCCTTTGAGAAACTCAAGGATGCAATATTGGTATATAAGTGTGGGCTTAATCAATTTTTAATGGACCATTGGGAAATTGGATCATTGGAAACTATGAATGAaagatttatttacacattcataCATGTATCTGTAGCTCAAATTTAATAGgcttaaattgtattgtgtCTACCAATGTTTGGCACGGagattttattcacatttagaGGATATCTGCTTTGTCATGGACCTAAATATGTACAATTAGAACATTGTCTTGCTGTGAATAAAATGACTTAAAGGAATGCAAACCAACAATTCCATAATTGTAACTTTGTGAAAAATGT

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006551 True 4227 mRNA 0.41 5 8644242 8660293

Neighbor

gene id symbol gene type direction distance location
AMCG00006546 NA coding upstream 400205 8222881 ~ 8244037 (+)
AMCG00006540 ube2h,LOC105888480,LOC107676921 coding upstream 609410 8026690 ~ 8034832 (+)
AMCG00006539 NA coding upstream 643720 7993931 ~ 8000522 (+)
AMCG00006533 NA coding upstream 663148 7967991 ~ 7981094 (+)
AMCG00006529 smo,LOC106609777,LOC104956154 coding upstream 677708 7955026 ~ 7966534 (+)
AMCG00006558 gpr85,LOC106576049 coding downstream 67350 8727643 ~ 8728326 (+)
AMCG00006556 bmt2 coding downstream 86301 8746594 ~ 8794059 (+)
AMCG00006555 NA coding downstream 139449 8799742 ~ 8807859 (+)
AMCG00006557 NA coding downstream 214180 8874473 ~ 8885595 (+)
AMCG00006561 dock4,LOC106609220 coding downstream 251987 8912280 ~ 9009240 (+)
G110447 NA non-coding upstream 464554 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 465514 8178521 ~ 8178728 (+)
G110444 NA non-coding upstream 468669 8173328 ~ 8175573 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding upstream 508750 8133095 ~ 8135492 (+)
G110429 NA non-coding upstream 554115 8088037 ~ 8090127 (+)
G110523 NA non-coding downstream 134767 8795060 ~ 8795331 (+)
G110558 NA non-coding downstream 227393 8887686 ~ 8888492 (+)
G110590 NA non-coding downstream 796372 9456665 ~ 9456911 (+)
G110681 NA non-coding downstream 1370133 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 1709422 10369715 ~ 10369931 (+)
G110445 NA other upstream 467456 8175760 ~ 8176786 (+)
G110279 NA other upstream 989048 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1731988 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 2055843 6519865 ~ 6588399 (+)
G110023 NA other upstream 2661333 5979062 ~ 5982909 (+)
AMCG00006552 NA other downstream 50457 8710750 ~ 8724066 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 903659 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 3485452 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 3959769 12620062 ~ 12651815 (+)
G111197 NA other downstream 4350891 13011184 ~ 13043448 (+)

Expression


Co-expression Network