AMCG00006552


Basic Information

Item Value
gene id AMCG00006552
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8710750 ~ 8724066 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006552
ATGCTCTGGTTAATTGAGAAGCACAGAGGTCTGATGATGGATGATGTAGGCACAGCGCTGCACATCATGGCTCCCGGCTCAGCCGTCCCTGCCGTGTTTGCAGCTCTCTTGTTACTCGCCTCTCTGCCGGGCGCCGAGGCTTTTGACGGGGGGGACGCCGTGGCTCTGCTCCTGGGGGTGACCGTCACCATCGTGGGCCTGTGCGCTTGCCTGGGCTGGTACTCCCGGAGGAGAAGCGGGCAGCTGTGA
>TU138383
TCTGACCCACTCGCAGCACATCATGGCTCCCGGCTCAGCCGTCCCTGCCGTGTTTGCAGCTCTCTTGTTACTCGCCTCTCTGCCGGGCGCCGAGGCTTTTGACGGGGGGGACGCCGTGGCTCTGCTCCTGGGGGTGACCGTCACCATCGTGGGCCTGTGCGCTTGCCTGGGCTGGTACTCCCGGAGGAGAAGCGGGCAGCTGTGAGAGCCGGGGCGGGGGGCGCACCTGTCCGGCAGCGGGCCTGCAAACGGATATGAAACATGTGGTCCATTATTCCCCCTGGCCGCGGTGGGGCTGATACGGACGCTGTGGTCCACGACAGTTCAAACCCTAATTGTATTTGCACTGAAAAAAAGGACAGATATCTCCCGACAAAGCGCTGTTTCAATCCTCCCTCTCCCGCTCGGCTGGGCAGCGGCACCTCCTGCACAGGGAAGAGGGGCAGTGATGGCCGATCAGTCAACAACACCGGGGAAGAAGAGGGGATAACGAGTGGACTGATGCCCTGGAGGTGGACGAGGGACACACGATTGCAGCACAAGAGGATGAGAAACTCGGTCTTCTCCCGCTTTTTGATTTTTGCCACTTTGGACATTGCATTGTGTGCCCTTTTGCAGTTCAGTCCTAACGAGTTACAATTGAAGGCTGGTTGCTTTAATGTGCCAGTTTGACTGCTCTTCTTCCTGTCCTGGTTGCTTCCTCTTTTGTTCGCCCCACTAGTAACACTCCGGGGGATGTACTTTCATTTCTTAGTAAAGAGAACCACTGGCCAACTGTACGCTTTgatttaaagtaataataataacgaaaCGTGTCTATACGTATTACCACCCCCCTGTTTTGCGTCATGCATGCCCCCTTTTCAGAGAAGCGAGATCCAGAAACGTGTCACCAGATACACAGGTTTTGAATCGAGATTAAGTCCAGGGCAGGTTTTGAACTTCATGGTAGATGATACCGGTTTACAGGTATTTACGTGCATATGGTTGCAACCTTATCCAATCTTATGTCGTCTGTGAATTCATAAATGCTCTGTAAAATCTGGTAACCTTGTATCTGTCAGATTAATACACGAGTATGAACTTTTTGTTACTGCTGTTTGTCTCACTGTATTGCACTGCACttagttttcttaaatgaaTTGGAGAATGAAAGTAGGACcactgtattaaaacattattcaacATCATTCTGTTATATTCAGGTTACTAAGGACAGGCAACAATAACTGAAATGTCTCATTTATAGtcttattatttgtactttttttataGTAGATAACACTGGTCTAAGAAAACCGTGCATTGCCTTCTTCACTGTTGTAATGGTTAaatcatttacttttctttactgTTTCCATAATGTTCATTGATCATTATTAAAATCTATTATCAATGCCAAATTGTATAAAACCTGAGTCTCTGAAATGTAGGTTTGTGAGGAATTGTATAGCCATACTTTCTGCTGTGTTGCCTTTAATATCCTTTGACAgtactttaatataaatatatgcatctATATCAATTACACACcaaaattacatatattactTTATGCCAAGTTTGtggtttttatttccctttttgctAATATAATAAACTTAATCTCTTGCAATT

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006552 False 249 mRNA 0.63 2 8710750 8722654
TU138383 True 1617 TUCP 0.45 1 8722450 8724066

Neighbor

gene id symbol gene type direction distance location
AMCG00006551 NA coding upstream 50457 8644242 ~ 8660293 (+)
AMCG00006546 NA coding upstream 466713 8222881 ~ 8244037 (+)
AMCG00006540 ube2h,LOC105888480,LOC107676921 coding upstream 675918 8026690 ~ 8034832 (+)
AMCG00006539 NA coding upstream 710228 7993931 ~ 8000522 (+)
AMCG00006533 NA coding upstream 729656 7967991 ~ 7981094 (+)
AMCG00006558 gpr85,LOC106576049 coding downstream 3577 8727643 ~ 8728326 (+)
AMCG00006556 bmt2 coding downstream 22528 8746594 ~ 8794059 (+)
AMCG00006555 NA coding downstream 75676 8799742 ~ 8807859 (+)
AMCG00006557 NA coding downstream 150407 8874473 ~ 8885595 (+)
AMCG00006561 dock4,LOC106609220 coding downstream 188214 8912280 ~ 9009240 (+)
G110447 NA non-coding upstream 531062 8179441 ~ 8179688 (+)
G110446 NA non-coding upstream 532022 8178521 ~ 8178728 (+)
G110444 NA non-coding upstream 535177 8173328 ~ 8175573 (+)
G110439 ahcyl2,LOC102228098,LOC105933830,LOC106941354,LOC103156365 non-coding upstream 575258 8133095 ~ 8135492 (+)
G110429 NA non-coding upstream 620623 8088037 ~ 8090127 (+)
G110523 NA non-coding downstream 70994 8795060 ~ 8795331 (+)
G110558 NA non-coding downstream 163620 8887686 ~ 8888492 (+)
G110590 NA non-coding downstream 732599 9456665 ~ 9456911 (+)
G110681 NA non-coding downstream 1306360 10030426 ~ 10031846 (+)
G110722 NA non-coding downstream 1645649 10369715 ~ 10369931 (+)
G110445 NA other upstream 533964 8175760 ~ 8176786 (+)
G110279 NA other upstream 1055556 7653672 ~ 7655194 (+)
G110163 LOC100846954 other upstream 1798496 6911876 ~ 6912254 (+)
AMCG00006501 fam19a5,LOC107552289,LOC106561036,LOC107721159,LOC103356475 other upstream 2122351 6519865 ~ 6588399 (+)
G110023 NA other upstream 2727841 5979062 ~ 5982909 (+)
AMCG00006565 LOC103366858,LOC103380581 other downstream 839886 9563952 ~ 9568276 (+)
AMCG00006624 NA other downstream 3421679 12145745 ~ 12323278 (+)
AMCG00006636 NA other downstream 3895996 12620062 ~ 12651815 (+)
G111197 NA other downstream 4287118 13011184 ~ 13043448 (+)
AMCG00006672 NA other downstream 5209600 13933666 ~ 13939475 (+)

Expression


Co-expression Network